Construct: ORF TRCN0000465559

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007433.1_s317c1
Derived from:
ccsbBroadEn_11501
DNA Barcode:
AACGTCTACCTACTGGCACAAAAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BAIAP2 (10458)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465559
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10458 BAIAP2 BAR/IMD domain containing a... XM_005256948.3 99.9% 100% 7C>T
2 human 10458 BAIAP2 BAR/IMD domain containing a... NM_017450.3 99.7% 99.8% 7C>T;1066_1067insCAG
3 human 10458 BAIAP2 BAR/IMD domain containing a... NM_006340.3 98.1% 98% (many diffs)
4 human 10458 BAIAP2 BAR/IMD domain containing a... XM_006721637.2 96.8% 96.2% (many diffs)
5 human 10458 BAIAP2 BAR/IMD domain containing a... NM_001144888.2 96.6% 96% (many diffs)
6 human 10458 BAIAP2 BAR/IMD domain containing a... XM_006721635.1 93.9% 94% 7C>T;54_152del
7 human 10458 BAIAP2 BAR/IMD domain containing a... XM_005256944.1 93.8% 93.8% 7C>T;54_152del;1165_1166insCAG
8 human 10458 BAIAP2 BAR/IMD domain containing a... NM_017451.3 93.5% 92.9% (many diffs)
9 human 10458 BAIAP2 BAR/IMD domain containing a... XM_006721636.1 92.5% 92.4% (many diffs)
10 human 10458 BAIAP2 BAR/IMD domain containing a... XM_011524193.1 92.5% 92.4% (many diffs)
11 human 10458 BAIAP2 BAR/IMD domain containing a... XM_005256945.1 92.3% 92.2% (many diffs)
12 human 10458 BAIAP2 BAR/IMD domain containing a... XM_017024017.1 91.4% 84.7% (many diffs)
13 human 10458 BAIAP2 BAR/IMD domain containing a... XM_011524194.1 91.2% 90.6% (many diffs)
14 human 10458 BAIAP2 BAR/IMD domain containing a... XM_005256943.1 91% 90.4% (many diffs)
15 human 10458 BAIAP2 BAR/IMD domain containing a... XM_024450534.1 84.7% 78.9% (many diffs)
16 human 10458 BAIAP2 BAR/IMD domain containing a... XM_017024018.1 82.3% 81.6% (many diffs)
17 human 10458 BAIAP2 BAR/IMD domain containing a... XM_024450535.1 82.3% 81.6% (many diffs)
18 human 10458 BAIAP2 BAR/IMD domain containing a... XM_011524195.1 51.5% 50.8% (many diffs)
19 human 10458 BAIAP2 BAR/IMD domain containing a... XM_011524196.1 51.5% 50.8% (many diffs)
20 human 10458 BAIAP2 BAR/IMD domain containing a... XM_017024019.1 51.5% 50.8% (many diffs)
21 human 10458 BAIAP2 BAR/IMD domain containing a... XM_011524197.1 51.3% 50.6% (many diffs)
22 mouse 108100 Baiap2 brain-specific angiogenesis... NM_130862.4 87.6% 95.7% (many diffs)
23 mouse 108100 Baiap2 brain-specific angiogenesis... XM_006531966.3 86.2% 94% (many diffs)
24 mouse 108100 Baiap2 brain-specific angiogenesis... XM_006531967.3 86.2% 94% (many diffs)
25 mouse 108100 Baiap2 brain-specific angiogenesis... XM_006531968.3 86.2% 94% (many diffs)
26 mouse 108100 Baiap2 brain-specific angiogenesis... NM_001037755.3 84.8% 92.1% (many diffs)
27 mouse 108100 Baiap2 brain-specific angiogenesis... NM_001037754.3 80.9% 89.2% (many diffs)
28 mouse 108100 Baiap2 brain-specific angiogenesis... XM_006531969.3 78.2% 85.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1632
ORF length:
1566
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc tttgtctcgc tcagaggaga tgcaccggct cacggaaaat gtctataaga
121ccatcatgga gcagttcaac cctagcctcc ggaacttcat cgccatgggg aagaattacg
181agaaggcact ggcaggtgtg acgtatgcag ccaaaggcta ctttgacgcc ctggtgaaga
241tgggggagct ggccagcgag agccagggct ccaaagaact cggagacgtt ctcttccaga
301tggctgaagt ccacaggcag atccagaatc agctggaaga aatgctgaag tcttttcaca
361acgagctgct tacgcagctg gagcagaagg tggagctgga ctccaggtat ctgagtgctg
421cgctgaagaa ataccagact gagcaaagga gcaaaggcga cgccctggac aagtgtcagg
481ctgagctgaa gaagcttcgg aagaagagcc agggcagcaa gaatcctcag aagtactcgg
541acaaggagct gcagtacatc gacgccatca gcaacaagca gggcgagctg gagaattacg
601tgtccgacgg ctacaagacc gcactgacag aggagcgcag gcgcttctgc ttcctggtgg
661agaagcagtg cgccgtggcc aagaactccg cggcctacca ctccaagggc aaggagctgc
721tggcgcagaa gctgccgctg tggcaacagg cctgtgccga ccccagcaag atcccggagc
781gcgcggtgca gctcatgcag caggtggcca gcaacggcgc caccctcccc agcgccctgt
841cggcctccaa gtccaacctg gtcatttccg accccattcc gggggccaag cccctgccgg
901tgccccccga gctggcaccg ttcgtggggc ggatgtctgc ccaggagagc acacccatca
961tgaacggcgt cacaggcccg gatggcgagg actacagccc gtgggctgac cgcaaggctg
1021cccagcccaa atccctgtct cctccgcagt ctcagagcaa gctcagcgac tcctactcca
1081acacactccc cgtgcgcaag agcgtgaccc caaaaaacag ctatgccacc acagccgaga
1141acaagactct gcctcgctcg agctccatgg cagccggcct ggagcgcaat ggccgtatgc
1201gggtgaaggc catcttctcc cacgctgctg gggacaacag caccctcctg agcttcaagg
1261agggtgacct cattaccctg ctggtgcctg aggcccgcga tgGCTGGCAC TACGGAGAGA
1321GTGAGAAGAC CAAGATGCGG GGCTGGTTTC CCTTCTCCTA CACCCGGGTC TTGGACAGCG
1381ATGGCAGTGA CAGGCTGCAC ATGAGCCTGC AGCAAGGGAA GAGCAGCAGC ACGGGCAACC
1441TCCTGGACAA GGACGACCTG GCCATCCCAC CCCCCGATTA CGGCGCCGCC TCCCGGGCCT
1501TCCCCGCCCA GACGGCCAGC GGCTTCAAGC AGAGGCCCTA CAGTGTGGCC GTGCCCGCCT
1561TCTCCCAGGG CCTGGATGAC TATGGAGCGC GGTCCATGAG CAGTGGCAGC GGCACGCTGG
1621TGTCCACAGT GTGCCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1681ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
1741CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAAAC GTCTACCTAC TGGCACAAAA
1801CACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)