Construct: ORF TRCN0000465608
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007062.1_s317c1
- Derived from:
- ccsbBroadEn_03862
- DNA Barcode:
- CTACAAAATTAGTCGAGAGTACAG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- INIP (58493)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000465608
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 58493 | INIP | INTS3 and NABP interacting ... | NM_021218.3 | 100% | 100% | |
| 2 | human | 58493 | INIP | INTS3 and NABP interacting ... | NM_001329585.2 | 95.5% | 92.3% | (many diffs) |
| 3 | human | 58493 | INIP | INTS3 and NABP interacting ... | NM_001329588.2 | 71.1% | 71.1% | 0_1ins90 |
| 4 | human | 58493 | INIP | INTS3 and NABP interacting ... | NM_001329589.2 | 71.1% | 71.1% | 0_1ins90 |
| 5 | human | 58493 | INIP | INTS3 and NABP interacting ... | NM_001329590.2 | 71.1% | 71.1% | 0_1ins90 |
| 6 | human | 58493 | INIP | INTS3 and NABP interacting ... | NM_001329586.2 | 63.8% | 42.9% | 126_127ins91;222_255del |
| 7 | human | 58493 | INIP | INTS3 and NABP interacting ... | NM_001329587.2 | 60.4% | 19.8% | 23_24ins103;210_243del |
| 8 | human | 58493 | INIP | INTS3 and NABP interacting ... | NR_138056.2 | 5.2% | (many diffs) | |
| 9 | human | 58493 | INIP | INTS3 and NABP interacting ... | NR_138055.2 | 5.2% | (many diffs) | |
| 10 | mouse | 66209 | Inip | INTS3 and NABP interacting ... | NM_001013577.1 | 90.3% | 96.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 402
- ORF length:
- 312
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGCAGCAAA CTCTTCAGGA CAAGGTTTTC 121 AAAACAAAAA TAGAGTTGCA ATCTTGGCAG AACTGGACAA AGAGAAAAGA AAACTACTTA 181 TGCAGAACCA GTCTTCAACA AATCATCCTG GAGCTAGCAT TGCACTCTCG AGACCCTCTC 241 TTAATAAGGA CTTCCGGGAT CACGCTGAGC AGCAGCATAT TGCAGCCCAA CAGAAGGCAG 301 CTTTGCAGCA TGCTCATGCA CATTCATCTG GATACTTCAT CACTCAAGAC TCTGCATTTG 361 GGAACCTTAT TCTTCCTGTT TTACCTCGCC TTGACCCAGA ATGCCCAACT TTCTTGTACA 421 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 481 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 541 AGGACGACTA CAAAATTAGT CGAGAGTACA GACGCGTTAA GTCgacaatc aacctctgga 601 ttacaaaatt tgtgaaagat t