Construct: ORF TRCN0000466154
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013642.1_s317c1
- Derived from:
- ccsbBroadEn_03640
- DNA Barcode:
- AGAGTTTACACGCATGCCCGAGAG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CEP72 (55722)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466154
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55722 | CEP72 | centrosomal protein 72 | NM_018140.4 | 100% | 100% | |
| 2 | human | 55722 | CEP72 | centrosomal protein 72 | XM_011514063.1 | 100% | 100% | |
| 3 | human | 55722 | CEP72 | centrosomal protein 72 | XM_005248322.3 | 92.2% | 92.2% | 0_1ins150 |
| 4 | human | 55722 | CEP72 | centrosomal protein 72 | XM_011514064.2 | 92.2% | 92.2% | 0_1ins150 |
| 5 | human | 55722 | CEP72 | centrosomal protein 72 | XR_925628.1 | 87.6% | 1_18del;1960_2214del | |
| 6 | human | 55722 | CEP72 | centrosomal protein 72 | XR_001742148.1 | 85.3% | (many diffs) | |
| 7 | human | 55722 | CEP72 | centrosomal protein 72 | XR_001742146.1 | 85% | (many diffs) | |
| 8 | human | 55722 | CEP72 | centrosomal protein 72 | XM_017009626.1 | 70.7% | 70.7% | 0_1ins567 |
| 9 | human | 55722 | CEP72 | centrosomal protein 72 | XM_017009627.1 | 70.7% | 70.7% | 0_1ins567 |
| 10 | human | 55722 | CEP72 | centrosomal protein 72 | XR_925630.2 | 50.6% | 1_18del;1960_3831del | |
| 11 | human | 55722 | CEP72 | centrosomal protein 72 | NR_164122.1 | 43.3% | 1_22del;104_261del;2122_4475del | |
| 12 | human | 55722 | CEP72 | centrosomal protein 72 | XR_925631.2 | 29.4% | 1_18del;1557_4621del;5025_6588del | |
| 13 | human | 55722 | CEP72 | centrosomal protein 72 | XR_001742149.1 | 27% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2007
- ORF length:
- 1941
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc gcgggctggc cctcggctgg tgctgagcga ggaggcggtt cgggcgaaga 121 gcggcttagg gcctcaccgc gacctggctg agcttcagtc attgtctatt cctggaactt 181 accaagagaa gatcacccac ctgggacatt ctctgatgag tttaacaggt ctgaaatctt 241 tggatctctc gcgcaactcc ttggttagtc tggagggcat tcagtacctg actgcattgg 301 agagtctcaa tctctactac aactgcatct cctcgttggc agaagtgttt cggctccacg 361 ccttaaccga gctcgtggat gtggacttcc ggctgaaccc cgtggtgaag gttgagcctg 421 actaccgcct ttttgttgtg cacctgctcc ccaagctcca gcagctggac gatcgccccg 481 tgagagcaag cgagcggaag gcttcccgac tgcattttgc atcagaggac tcactcgact 541 ccaaagagag cgtcccagct tctttgaaag agggcagacc acaccacccc agagccaagt 601 gcaccgaggc cttggccaag cagagcctgg tcatggatgc ggatgacgag gcagtcctga 661 acctcattgc agagtgcgag tgggacctcg gcaggcctcc cgggagcacg agcttcagcc 721 agaaggggcg tgaggccgac tctcgtggtt cccaagaatc cagacatctg ttgagcccgc 781 agttggtaca gtaccagtgt ggggactctg ggaagcaggg ccgtgagacg aggaggagca 841 gctgcagagg gtgctgtctg gagaagatgc cttggagcca gctctgtgga gagcttccgc 901 cactgtacgg agcggagcca gaggcctccc gtgcccccag gccacacacg tacttcaccc 961 cacacccaga ctccatggat accgaggact cggcctcttc tcagaagttg gatttgtcag 1021 gagaaatggt gcctggtccc ctgccagccc ccggaaagtg caggaagcga agaatgcctg 1081 ttggaagatt ccagacgttt tcggaccagg agggtttggg ctgcccggag agaactcatg 1141 ggtcctccgt gcccaaggag agcctgagca gacaggacag ctcagaaagc aggaacggga 1201 ggaccttgtc tcagcctgag gcctcggaga ctgaggagca gaggtctcgg ggtgtgaccg 1261 acaccagaga gccgtctccc gggtcacact cggctctacc cgggaagaag acggccctgc 1321 aggcggcgct cctggagacg ctcttggacc tggtggacag gagctggggc ggctgcaggt 1381 ccctgcacag caacgaggca ttccttgctc aggcaagaca catcttgtca tctgttgaag 1441 aattcacagc agctcaggac agctctgcga tggtgggtga agatgtcggc tccctggctc 1501 tggagagtaa gtccctgcaa agccgccttg ctgagcagca gcagcagcac gcccgggaga 1561 tgagcgaggt gacggcggag ctgcaccaca cacacaagga gctggatgat tTGAGACAAC 1621 ATTTAGATAA ATCTTTGGAA GAGAACAGTA GGTTAAAATC GCTTTTGTTG AGTATGAAAA 1681 AGGAAGTGAA GAGTGCAGAC ACTGCAGCCA CGTTAAATTT GCAGATCGCT GGACTTCAAA 1741 CAAGTGTGAA GAGGCTGTGT GGCGAGATTG TGGAACTGAA GCAGCACCTG GAGCACTACG 1801 ACAAGATCCA GGAGCTCACG CAGATGCTGC AGGAGAGCCA CAGCTCCCTG GTCAGCACCA 1861 ATGAACACCT GCTGCAGGAG CTGAGCCAGG TGCGGGCGCA GCACAGAGCC GAGGTGGAGC 1921 AGATGCACTG GAGCTACCAG GAGCTCAAGA AGACCATGGC CCTGTTTCCA CACAGCAGCG 1981 CCAGCCATGG AGGCTGCCAG GCCTGCTGCC CAACTTTCTT GTACAAAGTG GTTGATATCG 2041 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 2101 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAAGAGTTTA 2161 CACGCATGCC CGAGAGACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 2221 aagatt