Construct: ORF TRCN0000466299
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009109.1_s317c1
- Derived from:
- ccsbBroadEn_15032
- DNA Barcode:
- GCGAATTAGCAAAAGAGCGTCGAG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATRNL1 (26033)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466299
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26033 | ATRNL1 | attractin like 1 | NM_001276282.4 | 100% | 100% | |
| 2 | human | 26033 | ATRNL1 | attractin like 1 | NR_074088.3 | 73.9% | (many diffs) | |
| 3 | human | 26033 | ATRNL1 | attractin like 1 | XM_017016036.1 | 41.4% | 40.3% | (many diffs) |
| 4 | human | 26033 | ATRNL1 | attractin like 1 | XM_011539589.2 | 35.3% | 34.4% | (many diffs) |
| 5 | human | 26033 | ATRNL1 | attractin like 1 | XM_011539587.1 | 34.5% | 33.7% | (many diffs) |
| 6 | human | 26033 | ATRNL1 | attractin like 1 | XM_017016035.2 | 33.6% | 32.8% | (many diffs) |
| 7 | human | 26033 | ATRNL1 | attractin like 1 | NM_207303.4 | 33.4% | 32.5% | (many diffs) |
| 8 | human | 26033 | ATRNL1 | attractin like 1 | XM_011539588.2 | 27.6% | 26.6% | (many diffs) |
| 9 | human | 26033 | ATRNL1 | attractin like 1 | XM_011539590.2 | 22.8% | 22% | (many diffs) |
| 10 | human | 26033 | ATRNL1 | attractin like 1 | XM_011539591.2 | 22.8% | 22% | (many diffs) |
| 11 | human | 26033 | ATRNL1 | attractin like 1 | XR_001747080.1 | 15.9% | (many diffs) | |
| 12 | human | 26033 | ATRNL1 | attractin like 1 | XR_945653.2 | 15.6% | (many diffs) | |
| 13 | mouse | 226255 | Atrnl1 | attractin like 1 | XR_001782587.1 | 58.9% | (many diffs) | |
| 14 | mouse | 226255 | Atrnl1 | attractin like 1 | XM_006527052.2 | 36.8% | 38.3% | (many diffs) |
| 15 | mouse | 226255 | Atrnl1 | attractin like 1 | XM_006527051.2 | 33.5% | 34.9% | (many diffs) |
| 16 | mouse | 226255 | Atrnl1 | attractin like 1 | XM_006527049.2 | 30.4% | 31.6% | (many diffs) |
| 17 | mouse | 226255 | Atrnl1 | attractin like 1 | NM_181415.4 | 29.8% | 31.1% | (many diffs) |
| 18 | mouse | 226255 | Atrnl1 | attractin like 1 | XM_011247244.1 | 27.3% | 28% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1467
- ORF length:
- 1401
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga gactgggggc cgggcccgca ctggtacccc gcagccagcg gccccggggg 121 tgtggagggc tcggccggcg ggcggcggcg gcgggggcgc ctcctcctgg ctgctggacg 181 ggaacagctg gctgctgtgc tatggcttcc tctacctggc gctctacgcg caggtgtccc 241 agtccaagcc gtgcgagagg accggctcct gcttctcggg ccgctgtgtc aactccacct 301 gcctctgcga cccgggctgg gtgggggacc agtgccagca ctgccagggc aggttcaagt 361 taacagaacc ttctggatat ttaacagatg gcccaattaa ctataaatat aaaactaaat 421 gtacttggct cattgaaggc tatccaaatg cagtgttaag attaagattc aatcattttg 481 ctacagaatg tagctgggat catatgtatg tttatgatgg agattcaata tatgcacctt 541 taatagctgt acttagtggt ttgatagtcc ctgaaataag gggcaatgaa actgtgcctg 601 aagttgttac tacatctggc tatgcactgt tacatttttt tagtgatgct gcgtataatc 661 taactggttt caacattttc tattcaatca attcttgtcc taacaattgc tctggtcatg 721 ggaagtgtac aactagtgtc tctgttccaa gtcaagtata ttgtgaatgt gataaatact 781 ggaagggtga agcttgtgat attccttact gtaaagccaa ttgcggcagt ccagatcacg 841 gttactgtga cctgactgga gaaaaattat gtgtctgcaa tgatagttgg caaggtcctg 901 attgttcttt gaatgttccc tctactgagt cttactggat tctgccaaac gttaaaccct 961 tcagtccttc tgtaggtcgg gcttcacata aagcagtttt acacgggaaa tttatgtggg 1021 tgattggtgg atatactttt aactacagtt cttttcaaat ggTCCTAAAT TACAATTTAG 1081 AAAGCAGTAT ATGGAATGTA GGAACTCCAT CAAGGGGACC TCTCCAGAGA TATGGACACT 1141 CTCTTGCTTT ATATCAGGAA AACATCTTTA TGTATGGAGG CAGAATTGAA ACAAATGATG 1201 GCAATGTCAC AGATGAATTA TGGGTTTTTA ACATACATAG TCAGTCATGG AGTACAAAAA 1261 CTCCTACTGT TCTTGGACAT GGTCAGCAGT ATGCTGTGGA GGGACATTCA GCACATATTA 1321 TGGAGTTGGA TAGTAGAGAT GTTGTCATGA TCATAATATT TGGATATTCT GCAATATATG 1381 GTTATACAAG CAGCATACAG GAATACCATA TCTGTGAGTT ACTTAAAAAT TGTAATTTCT 1441 TTATTGATTG GGAATGTTTT TCTCTTTACC CAACTTTCTT GTACAAAGTG GTTGATATCG 1501 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 1561 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAGCGAATTA 1621 GCAAAAGAGC GTCGAGACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 1681 aagatt