Construct: ORF TRCN0000466543
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009550.1_s317c1
- Derived from:
- ccsbBroadEn_07641
- DNA Barcode:
- TTCTGTAACGCGAACGGGTCCGGC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCT7 (10574)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466543
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10574 | CCT7 | chaperonin containing TCP1 ... | NM_006429.4 | 99.9% | 100% | 1311A>T |
| 2 | human | 10574 | CCT7 | chaperonin containing TCP1 ... | NM_001166285.1 | 91.8% | 91.8% | 0_1ins132;1179A>T |
| 3 | human | 10574 | CCT7 | chaperonin containing TCP1 ... | XM_011532478.3 | 91.8% | 91.8% | 0_1ins132;1179A>T |
| 4 | human | 10574 | CCT7 | chaperonin containing TCP1 ... | XM_011532479.2 | 91.8% | 91.8% | 0_1ins132;1179A>T |
| 5 | human | 10574 | CCT7 | chaperonin containing TCP1 ... | NM_001166284.1 | 83.8% | 83.6% | (many diffs) |
| 6 | human | 10574 | CCT7 | chaperonin containing TCP1 ... | NR_029402.1 | 80.8% | (many diffs) | |
| 7 | human | 10574 | CCT7 | chaperonin containing TCP1 ... | NR_029403.1 | 75.9% | (many diffs) | |
| 8 | human | 10574 | CCT7 | chaperonin containing TCP1 ... | NM_001009570.2 | 62.3% | 62% | 0_1ins579;5_6ins33;699A>T |
| 9 | mouse | 12468 | Cct7 | chaperonin containing Tcp1,... | NM_007638.4 | 89.1% | 95.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1695
- ORF length:
- 1629
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgat gcccacacca gttatcctat tgaaagaggg gactgatagc tcccaaggca 121 tcccccagct tgtgagtaac atcagtgcct gccaggtgat tgctgaggct gtaagaacta 181 ccctgggtcc ccgtggcatg gacaagctta ttgtagatgg cagaggcaaa gcaacaattt 241 ctaatgatgg ggccacaatt ctgaaacttc ttgatgttgt ccatcctgca gcaaagactt 301 tggtagacat tgccaaatcc caagatgctg aggtgggtga tggcaccacc tcagtgacct 361 tgctggctgc agagtttctg aagcaggtga aaccctatgt ggaggaaggt ttacaccccc 421 agatcatcat tcgagctttc cgcacagcca cccagctggc agttaacaag atcaaagaga 481 ttgctgtgac cgtgaagaag gcagataaag tggagcagag gaagctgctg gaaaagtgtg 541 ccatgaccgc tctgagctcc aagctgatct cccagcagaa agctttcttt gctaagatgg 601 tggtggatgc agtgatgatg ctcgatgatt tgctgcagct taaaatgatt ggaatcaaga 661 aggtacaggg tggagccctc gaggattctc agctggtagc tggtgttgca ttcaagaaga 721 ctttctctta cgctgggttt gaaatgcaac ccaaaaagta ccacaatccc aagattgccc 781 ttttgaatgt cgagctcgag ttgaaagctg agaaagacaa tgctgagata agagtccaca 841 cagttgagga ttatcaggca attgttgatg ctgagtggaa cattctctat gacaagttag 901 agaagatcca tcattctgga gccaaagttg tcttgtccaa actccccatt ggggatgtgg 961 ccacccagta ctttgctgac agggacatgt tctgtgctgg ccgagtacct gaggaggatc 1021 tgaagaggac aatgatggcc tgtggaggct caatccagac cagtgtgaat gctctgtcag 1081 cagatgtgct gggtcgatgc caggtgtttg aagagaccca gattggaggc gagaggtaca 1141 atttttttac tggctgcccc aaggccaaga catgcacctt cattctccgt ggcggcgccg 1201 agcagtttat ggaggagaca gagcggtccc tgcatgatgc catcatgatc gtcaggaggg 1261 ccatcaagaa tgattcagtg gtggctggtg gcggggccat tgagatggaa ctctccaagt 1321 accTGCGGGA TTACTCAAGG ACTATTCCAG GAAAACAGCA GCTGTTGATT GGGGCTTATG 1381 CCAAGGCCTT GGAGATTATC CCACGCCAGC TGTGTGACAA TGCTGGCTTT GATGCCACAA 1441 ACATTCTCAA CAAGCTGCGG GCTCGGCATG CCCAGGGGGG TACATGGTAT GGAGTAGACA 1501 TCAACAACGA GGACATTGCT GACAACTTTG AAGCTTTCGT GTGGGAGCCA GCTATGGTGC 1561 GGATCAATGC GCTGACAGCA GCCTCTGAGG CTGCGTGCCT GATCGTGTCT GTAGATGAAA 1621 CCATCAAGAA CCCCCGCTCG ACTGTGGATG CTCCCACAGC AGCAGGCCGG GGCCGTGGTC 1681 GTGGCCGCCC CCACTGCCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC 1741 CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA 1801 TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA TTCTGTAACG CGAACGGGTC 1861 CGGCACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt