Construct: ORF TRCN0000466772
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013135.1_s317c1
- Derived from:
- ccsbBroadEn_10509
- DNA Barcode:
- TCCTCTCACTTCAGCGTTTAGCAG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM193B (54540)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466772
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 54540 | FAM193B | family with sequence simila... | NM_001366498.1 | 99.8% | 99.5% | 6G>N;1084T>C |
2 | human | 54540 | FAM193B | family with sequence simila... | NM_001366499.1 | 99.8% | 99.5% | 6G>N;1084T>C |
3 | human | 54540 | FAM193B | family with sequence simila... | XM_006714885.1 | 99.8% | 99.5% | 6G>N;1084T>C |
4 | human | 54540 | FAM193B | family with sequence simila... | XM_024446121.1 | 76.3% | 76.1% | 1_414del;420G>N;1498T>C |
5 | human | 54540 | FAM193B | family with sequence simila... | NM_001366500.1 | 56.6% | 56.5% | 1_1023del;1029G>N;2107T>C |
6 | human | 54540 | FAM193B | family with sequence simila... | XM_006714878.2 | 56.6% | 56.5% | 1_1023del;1029G>N;2107T>C |
7 | human | 54540 | FAM193B | family with sequence simila... | XM_006714879.3 | 56.6% | 56.5% | 1_1023del;1029G>N;2107T>C |
8 | human | 54540 | FAM193B | family with sequence simila... | XM_006714880.2 | 56.6% | 56.5% | 1_1023del;1029G>N;2107T>C |
9 | human | 54540 | FAM193B | family with sequence simila... | XM_011534580.2 | 56.6% | 56.5% | 1_1023del;1029G>N;2107T>C |
10 | human | 54540 | FAM193B | family with sequence simila... | XM_011534579.2 | 56.1% | 55.9% | 1_1047del;1053G>N;2131T>C |
11 | human | 54540 | FAM193B | family with sequence simila... | XM_011534574.2 | 54.2% | 54.1% | 1_1128del;1134G>N;2212T>C |
12 | human | 54540 | FAM193B | family with sequence simila... | XM_024446120.1 | 54.2% | 54.1% | 1_1128del;1134G>N;2212T>C |
13 | human | 54540 | FAM193B | family with sequence simila... | NM_001190946.3 | 52.4% | 48.6% | (many diffs) |
14 | human | 54540 | FAM193B | family with sequence simila... | XM_011534573.1 | 52.1% | 51.9% | 1_1230del;1236G>N;2314T>C |
15 | human | 54540 | FAM193B | family with sequence simila... | XM_011534572.1 | 51.5% | 51.4% | 1_1257del;1263G>N;2341T>C |
16 | human | 54540 | FAM193B | family with sequence simila... | XM_006714875.2 | 49.5% | 49.4% | 1_1362del;1368G>N;2446T>C |
17 | human | 54540 | FAM193B | family with sequence simila... | XR_941105.1 | 41.6% | (many diffs) | |
18 | human | 54540 | FAM193B | family with sequence simila... | XR_941104.1 | 41.6% | (many diffs) | |
19 | human | 54540 | FAM193B | family with sequence simila... | XR_427806.2 | 39.8% | (many diffs) | |
20 | human | 54540 | FAM193B | family with sequence simila... | XR_427804.2 | 24.1% | (many diffs) | |
21 | mouse | 212483 | Fam193b | family with sequence simila... | XM_006517198.2 | 64.5% | 62% | (many diffs) |
22 | mouse | 212483 | Fam193b | family with sequence simila... | XM_017315476.1 | 64.5% | 62% | (many diffs) |
23 | mouse | 212483 | Fam193b | family with sequence simila... | XM_017315477.1 | 64.5% | 62% | (many diffs) |
24 | mouse | 212483 | Fam193b | family with sequence simila... | XM_017315475.1 | 51.8% | 49.8% | (many diffs) |
25 | mouse | 212483 | Fam193b | family with sequence simila... | NM_145382.4 | 49.7% | 47.8% | (many diffs) |
26 | mouse | 212483 | Fam193b | family with sequence simila... | XM_006517197.1 | 49.7% | 47.8% | (many diffs) |
27 | mouse | 212483 | Fam193b | family with sequence simila... | XM_011244505.1 | 49.7% | 47.8% | (many diffs) |
28 | mouse | 212483 | Fam193b | family with sequence simila... | XM_006517195.1 | 46.8% | 45.1% | (many diffs) |
29 | mouse | 212483 | Fam193b | family with sequence simila... | XM_006517194.3 | 43.3% | 41.7% | (many diffs) |
30 | mouse | 212483 | Fam193b | family with sequence simila... | XR_001780770.1 | 36% | (many diffs) | |
31 | mouse | 212483 | Fam193b | family with sequence simila... | XR_382427.3 | 34.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1410
- ORF length:
- 1344
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgaa ngggggcacc ctgggcggga tccctgggga gcccgccgtg gaccaccgag 121 atgtggatga gctgctggaa ttcatcaaca gcacggagcc caaagtcccc aacagcgcca 181 gggccgccaa gcgggcccgg cacaagctga aaaagaagga aaaggagaag gcccagttgg 241 cagcagaagc tctaaagcag gcaaatcgtg tttctggaag ccgggagcca aggcctgcca 301 gggagaggct cttggagtgg cccgaccggg aactggatcg ggtcaacagc ttcctgagca 361 gccgtctgca ggagatcaaa aacactgtca aagactccat ccgtgccagc ttcagtgtgt 421 gtgagctcag catggacagc aatggcttct ctaaggaggg ggctgctgag cctgagcctc 481 agagtctacc cccctcaaac ctcagtggct cctcagagca gcagcctgac atcaaccttg 541 acctgtcccc tttgactttg ggctcccctc agaaccacac gttacaagct ccaggcgagc 601 cagccccacc atgggcagaa atgagaggcc cccacccacc atggacagag gtgagggggc 661 cccctcccgg tatcgtcccc gagaacgggc tcgtgaggag actcaacacc gtgcccaacc 721 tatcccgggt gatctgggtc aagacaccca agccgggcta ccccagctcc gaggagccaa 781 gctcaaagga agttcccagt tgcaagcagg agctgcctga gcctgtgtcc tcaggtggga 841 agccacagaa gggcaagagg cagggcagtc aggccaagaa gagcgaggca agcccagccc 901 cccggccccc agccagccta gaggttccca gtgccaaggg ccaggtcgct ggccccaagc 961 agccaggcag ggtcctagag cttcccaaag taggcagctg tgctgaggct ggagaggGGA 1021 GCCGGGGGAG CCGGCCAGGA CCAGGTTGGG CTGGCAGTCC CAAAACTGAG AAGGAGAAGG 1081 GCAGCTCCTG GCGAAACTGG CCAGGCGAGG CCAAGGCACG GCCTCAGGAG CAGGAGTCTG 1141 TGCAGCCCCC AGGCCCAGCA AGGCCACAGA GCTTGCCCCA GGGCAAGGGC CGCAGCCGCC 1201 GGAGCCGCAA CAAGCAGGAG AAGCCAGCCT CCTCCTTGGA CGATGTGTTC CTGCCCAAGG 1261 ACATGGACGG GGTGGAGATG GATGAGACTG ACCGAGAGGT GGAGTACTTT AAGAGGTTCT 1321 GTTTGGATTC TGCAAAGCAG ACTCGTCAGA AAGTTGCTGT GAACTGGACC AACTTCAGCC 1381 TCAAGAAAAC CACTCCTAGC ACAGCTCAGT GCCCAACTTT CTTGTACAAA GTGGTTGATA 1441 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 1501 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATCCTC 1561 TCACTTCAGC GTTTAGCAGA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 1621 tgaaagatt