Construct: ORF TRCN0000466772

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013135.1_s317c1
Derived from:
ccsbBroadEn_10509
DNA Barcode:
TCCTCTCACTTCAGCGTTTAGCAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM193B (54540)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466772
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54540 FAM193B family with sequence simila... NM_001366498.1 99.8% 99.5% 6G>N;1084T>C
2 human 54540 FAM193B family with sequence simila... NM_001366499.1 99.8% 99.5% 6G>N;1084T>C
3 human 54540 FAM193B family with sequence simila... XM_006714885.1 99.8% 99.5% 6G>N;1084T>C
4 human 54540 FAM193B family with sequence simila... XM_024446121.1 76.3% 76.1% 1_414del;420G>N;1498T>C
5 human 54540 FAM193B family with sequence simila... NM_001366500.1 56.6% 56.5% 1_1023del;1029G>N;2107T>C
6 human 54540 FAM193B family with sequence simila... XM_006714878.2 56.6% 56.5% 1_1023del;1029G>N;2107T>C
7 human 54540 FAM193B family with sequence simila... XM_006714879.3 56.6% 56.5% 1_1023del;1029G>N;2107T>C
8 human 54540 FAM193B family with sequence simila... XM_006714880.2 56.6% 56.5% 1_1023del;1029G>N;2107T>C
9 human 54540 FAM193B family with sequence simila... XM_011534580.2 56.6% 56.5% 1_1023del;1029G>N;2107T>C
10 human 54540 FAM193B family with sequence simila... XM_011534579.2 56.1% 55.9% 1_1047del;1053G>N;2131T>C
11 human 54540 FAM193B family with sequence simila... XM_011534574.2 54.2% 54.1% 1_1128del;1134G>N;2212T>C
12 human 54540 FAM193B family with sequence simila... XM_024446120.1 54.2% 54.1% 1_1128del;1134G>N;2212T>C
13 human 54540 FAM193B family with sequence simila... NM_001190946.3 52.4% 48.6% (many diffs)
14 human 54540 FAM193B family with sequence simila... XM_011534573.1 52.1% 51.9% 1_1230del;1236G>N;2314T>C
15 human 54540 FAM193B family with sequence simila... XM_011534572.1 51.5% 51.4% 1_1257del;1263G>N;2341T>C
16 human 54540 FAM193B family with sequence simila... XM_006714875.2 49.5% 49.4% 1_1362del;1368G>N;2446T>C
17 human 54540 FAM193B family with sequence simila... XR_941105.1 41.6% (many diffs)
18 human 54540 FAM193B family with sequence simila... XR_941104.1 41.6% (many diffs)
19 human 54540 FAM193B family with sequence simila... XR_427806.2 39.8% (many diffs)
20 human 54540 FAM193B family with sequence simila... XR_427804.2 24.1% (many diffs)
21 mouse 212483 Fam193b family with sequence simila... XM_006517198.2 64.5% 62% (many diffs)
22 mouse 212483 Fam193b family with sequence simila... XM_017315476.1 64.5% 62% (many diffs)
23 mouse 212483 Fam193b family with sequence simila... XM_017315477.1 64.5% 62% (many diffs)
24 mouse 212483 Fam193b family with sequence simila... XM_017315475.1 51.8% 49.8% (many diffs)
25 mouse 212483 Fam193b family with sequence simila... NM_145382.4 49.7% 47.8% (many diffs)
26 mouse 212483 Fam193b family with sequence simila... XM_006517197.1 49.7% 47.8% (many diffs)
27 mouse 212483 Fam193b family with sequence simila... XM_011244505.1 49.7% 47.8% (many diffs)
28 mouse 212483 Fam193b family with sequence simila... XM_006517195.1 46.8% 45.1% (many diffs)
29 mouse 212483 Fam193b family with sequence simila... XM_006517194.3 43.3% 41.7% (many diffs)
30 mouse 212483 Fam193b family with sequence simila... XR_001780770.1 36% (many diffs)
31 mouse 212483 Fam193b family with sequence simila... XR_382427.3 34.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1410
ORF length:
1344
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa ngggggcacc ctgggcggga tccctgggga gcccgccgtg gaccaccgag
121atgtggatga gctgctggaa ttcatcaaca gcacggagcc caaagtcccc aacagcgcca
181gggccgccaa gcgggcccgg cacaagctga aaaagaagga aaaggagaag gcccagttgg
241cagcagaagc tctaaagcag gcaaatcgtg tttctggaag ccgggagcca aggcctgcca
301gggagaggct cttggagtgg cccgaccggg aactggatcg ggtcaacagc ttcctgagca
361gccgtctgca ggagatcaaa aacactgtca aagactccat ccgtgccagc ttcagtgtgt
421gtgagctcag catggacagc aatggcttct ctaaggaggg ggctgctgag cctgagcctc
481agagtctacc cccctcaaac ctcagtggct cctcagagca gcagcctgac atcaaccttg
541acctgtcccc tttgactttg ggctcccctc agaaccacac gttacaagct ccaggcgagc
601cagccccacc atgggcagaa atgagaggcc cccacccacc atggacagag gtgagggggc
661cccctcccgg tatcgtcccc gagaacgggc tcgtgaggag actcaacacc gtgcccaacc
721tatcccgggt gatctgggtc aagacaccca agccgggcta ccccagctcc gaggagccaa
781gctcaaagga agttcccagt tgcaagcagg agctgcctga gcctgtgtcc tcaggtggga
841agccacagaa gggcaagagg cagggcagtc aggccaagaa gagcgaggca agcccagccc
901cccggccccc agccagccta gaggttccca gtgccaaggg ccaggtcgct ggccccaagc
961agccaggcag ggtcctagag cttcccaaag taggcagctg tgctgaggct ggagaggGGA
1021GCCGGGGGAG CCGGCCAGGA CCAGGTTGGG CTGGCAGTCC CAAAACTGAG AAGGAGAAGG
1081GCAGCTCCTG GCGAAACTGG CCAGGCGAGG CCAAGGCACG GCCTCAGGAG CAGGAGTCTG
1141TGCAGCCCCC AGGCCCAGCA AGGCCACAGA GCTTGCCCCA GGGCAAGGGC CGCAGCCGCC
1201GGAGCCGCAA CAAGCAGGAG AAGCCAGCCT CCTCCTTGGA CGATGTGTTC CTGCCCAAGG
1261ACATGGACGG GGTGGAGATG GATGAGACTG ACCGAGAGGT GGAGTACTTT AAGAGGTTCT
1321GTTTGGATTC TGCAAAGCAG ACTCGTCAGA AAGTTGCTGT GAACTGGACC AACTTCAGCC
1381TCAAGAAAAC CACTCCTAGC ACAGCTCAGT GCCCAACTTT CTTGTACAAA GTGGTTGATA
1441TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
1501CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATCCTC
1561TCACTTCAGC GTTTAGCAGA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1621tgaaagatt

Download FASTA (ORF) (Full)