Construct: ORF TRCN0000466984

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007982.1_s317c1
Derived from:
ccsbBroadEn_06516
DNA Barcode:
AACCGCTAGTGGTACGGCGCCTCA
Epitope Tag:
V5 (not translated due to frame shift)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LASP1 (3927)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466984
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3927 LASP1 LIM and SH3 protein 1 NM_006148.4 99.6% 100% 357C>T;438A>G;783C>T
2 human 3927 LASP1 LIM and SH3 protein 1 NM_001271608.1 78.1% 68.6% (many diffs)
3 human 3927 LASP1 LIM and SH3 protein 1 NR_073384.2 19.1% (many diffs)
4 mouse 16796 Lasp1 LIM and SH3 protein 1 NM_010688.4 90.3% 95.4% (many diffs)
5 mouse 16796 Lasp1 LIM and SH3 protein 1 XM_006532341.1 90.3% 95.4% (many diffs)
6 mouse 16796 Lasp1 LIM and SH3 protein 1 XM_006532342.1 77.4% 82.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
849
ORF length:
783
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa ccccaactgc gcccggtgcg gcaagatcgt gtatcccacg gagaaggtga
121actgtctgga taagttctgg cataaagcat gcttccattg cgagacctgc aagatgacac
181tgaacatgaa gaactacaag ggctacgaga agaagcccta ctgcaacgca cactacccca
241agcagtcctt caccatggtg gcggacaccc cggaaaacct tcgcctcaag caacagagtg
301agctccagag tcaggtgcgc tacaaggagg agtttgagaa gaacaagggc aaaggtttca
361gcgtagtggc agacacgccc gagctccaga gaaTCAAGAA GACCCAGGAC CAGATCAGTA
421ATATAAAATA CCATGAGGAG TTTGAGAAGA GCCGCATGGG CCCTAGCGGG GGCGAGGGCA
481TGGAGCCAGA GCGTCGGGAT TCGCAGGACG GCAGCAGCTA CCGGCGGCCC CTGGAGCAGC
541AGCAGCCTCA CCACATCCCG ACCAGTGCCC CGGTTTACCA GCAGCCCCAG CAGCAGCCGG
601TGGCCCAGTC CTATGGTGGC TACAAGGAGC CTGCAGCCCC AGTCTCCATA CAGCGCAGCG
661CCCCAGGTGG TGGCGGGAAG CGGTACCGCG CGGTGTATGA CTACAGCGCC GCCGACGAGG
721ACGAGGTCTC CTTCCAGGAC GGGGACACCA TCGTCAACGT GCAGCAGATC GACGACGGCT
781GGATGTACGG GACGGTGGAG CGCACCGGCG ACACGGGGAT GCTGCCGGCC AACTACGTGG
841AGGCCATTTG CCCAACTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC
901TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT
961TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAAACCGCT AGTGGTACGG CGCCTCAACG
1021CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)