Construct: ORF TRCN0000466988

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007705.1_s317c1
Derived from:
ccsbBroadEn_05956
DNA Barcode:
TTTGATACTTCGTTTTAAGAATTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CD8B (926)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466988
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 926 CD8B CD8b molecule NM_172213.4 99.8% 100% 25T>C
2 human 926 CD8B CD8b molecule XM_011533164.2 87.9% 85.3% (many diffs)
3 human 926 CD8B CD8b molecule NM_172101.4 87.7% 86% (many diffs)
4 human 926 CD8B CD8b molecule NM_172102.4 87.5% 87.6% 25T>C;493_494ins90
5 human 927 CD8B2 CD8b2 molecule XM_024453217.1 87.1% 83.7% (many diffs)
6 human 926 CD8B CD8b molecule NM_004931.5 85.7% 85.1% (many diffs)
7 human 927 CD8B2 CD8b2 molecule NM_001368307.2 85.3% 84.3% (many diffs)
8 human 927 CD8B2 CD8b2 molecule NM_001349727.2 84.9% 83.5% (many diffs)
9 human 926 CD8B CD8b molecule NM_001178100.1 81.3% 65.9% 25T>C;493_494ins127;594_595insTGAAAACA
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
798
ORF length:
729
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gcggccgcgg ctgtggctcc tcctggccgc gcagctgaca gttctccatg
121gcaactcagt cctccagcag acccctgcat acataaaggt gcaaaccaac aagatggtga
181tgctgtcctg cgaggctaaa atctccctca gtaacatgcg catctactgg ctgagacagc
241gccaggcacc gagcagtgac agtcaccacg agttcctggc cctctgggat tccgcaaaag
301ggactatcca cggtgaagag gtggaacagg agaagatagc tgtgtttcgg gatgcaagcc
361ggttcattct caatctcaca agcgtgaagc cggaagacag tggcatctac ttctgcatga
421tcgtcgggag ccccgagctg accTTCGGGA AGGGAACTCA GCTGAGTGTG GTTGATTTCC
481TTCCCACCAC TGCCCAGCCC ACCAAGAAGT CCACCCTCAA GAAGAGAGTG TGCCGGTTAC
541CCAGGCCAGA GACCCAGAAG GGCCCACTTT GTAGCCCCAT CACCCTTGGC CTGCTGGTGG
601CTGGCGTCCT GGTTCTGCTG GTTTCCCTGG GAGTGGCCAT CCACCTGTGC TGCCGGCGGA
661GGAGAGCCCG GCTTCGTTTC ATGAAACAGC CTCAAGGGGA AGGTATATCA GGAACCTTTG
721TCCCCCAATG CCTGCATGGA TACTACAGCA ATACTACAAC CTCACAGAAG CTGCTTAACC
781CATGGATCCT GAAAACATTG CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
841TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
901GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGATTTGATA CTTCGTTTTA
961AGAATTTACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)