Construct: ORF TRCN0000467486

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009508.1_s317c1
Derived from:
ccsbBroadEn_06984
DNA Barcode:
CATACATTCAGTAGCATGTTATTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNX1 (6642)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467486
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6642 SNX1 sorting nexin 1 NM_003099.5 99.9% 100% 630G>A
2 human 6642 SNX1 sorting nexin 1 NM_001242933.2 92.7% 91.5% (many diffs)
3 human 6642 SNX1 sorting nexin 1 NM_148955.4 87.4% 87.5% 269_270ins195;435G>A
4 human 6642 SNX1 sorting nexin 1 XR_001751380.1 73.3% (many diffs)
5 human 6642 SNX1 sorting nexin 1 XM_005254611.3 64.3% 63.1% (many diffs)
6 human 6642 SNX1 sorting nexin 1 XR_001751381.1 19.6% (many diffs)
7 mouse 56440 Snx1 sorting nexin 1 NM_019727.2 89.9% 94.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1632
ORF length:
1566
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc gtcgggtggt ggtggctgta gcgcttcgga gagactgcct ccgcccttcc
121ccggcctgga gccggagtcc gagggggcgg ccgggggatc agaacccgag gctggggaca
181gcgacaccga gggggaggac attttcaccg gcgccgcggt ggtcagtaaa catcagtctc
241caaagataac tacatccctt cttcccatca acaatggctc caaagaaaat gggatccatg
301aagaacaaga ccaagagcca caggatctct ttgcagatgc cacagtggag ctatccttgg
361acagcacaca aaataatcag aagaaggtgc tagccaaaac actcatttct cttcctcctc
421aggaagccac aaattcttcg aagccccagc caacctatga ggagctagag gaagaagaac
481aggaggatca atttgatttg acagtcggta taactgatcc tgagaagata ggggatggta
541tgaatgcata tgtagcctac aaagttacaa cacagacaag cttaccattg ttcagaagca
601aacagtttgc agtaaaaaga agatttagtg actttctggg tctttatgag aagctttccg
661agaagcactc tcagaatggc ttcattgtcc ctccaccccc ggagaagagc ctcataggga
721tgacaaaagt gaaagttggg aaggaagatt cttcttctgc agaatttctt gaaaaacgga
781gggccgcttt agaaaggtac cttcagagga ttgtaaatca tcctaccatg ttacaggacc
841ctgacgtcag agagttcttg gaaaaagaag agctgccacg tgccgtgggt acccagacat
901tgagtggtgc tggtctcctc aagatgttca acaaagccac agatgccgtc agcaaaatga
961ccatcaagat gaatgaatca gacatttggt ttgaggagaa gctccaggag gtagagtgtg
1021aggagcagcg cttacggaaa ctgcatgctg ttgtagaaac tctagtcaac cataggaaag
1081agctagcgct gaacacagcc cagtttgcaa agagtctagc catgcttggg agctctgagg
1141acaacacggc attgtcacgg gcactctccc agctggctga ggtggaagaa aaaattgagc
1201agctccacca ggaacaggcc aacaatgact tcttcctcct tgctgagctc ctgagtgact
1261acattcgccT CCTGGCCATA GTCCGCGCTG CCTTCGACCA GCGCATGAAG ACATGGCAGC
1321GCTGGCAGGA TGCCCAAGCC ACACTGCAGA AGAAGCGGGA GGCCGAGGCT CGGCTGCTGT
1381GGGCCAACAA GCCTGATAAG CTGCAGCAGG CCAAGGACGA GATCCTCGAG TGGGAGTCTC
1441GGGTGACTCA ATATGAAAGG GACTTCGAGA GGATTTCAAC AGTGGTCCGA AAAGAAGTGA
1501TACGGTTTGA GAAAGAGAAA TCCAAGGACT TCAAGAACCA CGTGATCAAG TACCTTGAGA
1561CACTCCTTTA CTCACAGCAG CAGCTGGCAA AGTACTGGGA AGCCTTCCTT CCTGAGGCAA
1621AGGCCATCTC CTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1681ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
1741CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGACAT ACATTCAGTA GCATGTTATT
1801GACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)