Construct: ORF TRCN0000468239

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012855.1_s317c1
Derived from:
ccsbBroadEn_03558
DNA Barcode:
CTGATCCGCTGCAACAGCATCTCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC38A7 (55238)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468239
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55238 SLC38A7 solute carrier family 38 me... NM_001369608.1 100% 100%
2 human 55238 SLC38A7 solute carrier family 38 me... NM_001369609.1 100% 100%
3 human 55238 SLC38A7 solute carrier family 38 me... NM_001369611.1 100% 100%
4 human 55238 SLC38A7 solute carrier family 38 me... NM_018231.3 100% 100%
5 human 55238 SLC38A7 solute carrier family 38 me... XM_017023395.2 76.4% 74.6% 1030_1031ins200;1059_1060ins127
6 human 55238 SLC38A7 solute carrier family 38 me... XM_017023396.2 74.8% 74.8% 880_881ins348
7 human 55238 SLC38A7 solute carrier family 38 me... XM_017023398.2 67.4% 61.6% (many diffs)
8 human 55238 SLC38A7 solute carrier family 38 me... NM_001308384.2 67% 63.1% 880_881ins403;984_1062del
9 human 55238 SLC38A7 solute carrier family 38 me... NM_001369610.1 67% 63.1% 880_881ins403;984_1062del
10 human 55238 SLC38A7 solute carrier family 38 me... XM_017023399.2 52.9% 50.1% (many diffs)
11 human 55238 SLC38A7 solute carrier family 38 me... XR_001751952.2 33.6% 1_393del;1159_1225del;1847_4125del
12 human 55238 SLC38A7 solute carrier family 38 me... NR_161424.1 32.7% 1_393del;1623_1797del;1955_4233del
13 mouse 234595 Slc38a7 solute carrier family 38, m... NM_172758.4 89.2% 94.8% (many diffs)
14 mouse 234595 Slc38a7 solute carrier family 38, m... XM_006530876.3 89.2% 94.8% (many diffs)
15 mouse 234595 Slc38a7 solute carrier family 38, m... XM_006530877.2 89.2% 94.8% (many diffs)
16 mouse 234595 Slc38a7 solute carrier family 38, m... XM_006530878.1 66.2% 70.1% (many diffs)
17 mouse 234595 Slc38a7 solute carrier family 38, m... XM_011248357.1 55.1% 52.3% (many diffs)
18 mouse 234595 Slc38a7 solute carrier family 38, m... XM_006530879.1 45.5% 48.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1452
ORF length:
1386
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ccaggtcagc atcaacaatg actacagcga gtgggacttg agcacggatg
121ccggggagcg ggctcggctg ctgcagagtc cctgtgtgga cacagccccc aagagtgagt
181gggaagcctc tcctgggggt ctggacagag gcaccacttc cacacttggg gccatcttca
241tcgtcgtcaa cgcgtgcctg ggtgcagggt tactcaactt cccagcagcc ttcagcactg
301cggggggcgt ggcagcaggc atcgcactgc agatgggtat gctggttttc atcatcagtg
361gccttgtcat cctggcctac tgctcccagg ccagcaatga gaggacctac caggaggtgg
421tatgggctgt gtgtggcaag ctgacaggtg tgctatgtga ggtggccatc gctgtctaca
481cctttggcac ctgcattgcc ttcctaatca tcattggcga ccagcaggac aagattatag
541ctgtgatggc gaaagagccg gagggggcca gcggcccttg gtacacagac cgcaagttca
601ccatcagcct cactgccttc ctcttcatcc tgcccctctc catccccagg gagattggtt
661tccagaaata tgccagcttc ctgagcgtcg tgggtacctg gtacgtcaca gccatcgtta
721tcatcaagta catctggcca gataaagaga tgaccccagg gaacatcctg accaggccgg
781cttcctggat ggctgtgttc aatgccatgc ccaccatctg cttcggattt cagtgccacg
841tcagcagtgt gcccgtcttc aacagcatgc agcagcctga agtgaagacc tggggtggag
901tggtgacagc tgccatggtc atagccctcg ctgtctacat ggggacaggc atctgtggct
961tcctgacctt tGGAGCTGCT GTGGATCCTG ACGTGCTCCT GTCCTATCCC TCGGAGGACA
1021TGGCCGTGGC CGTTGCCCGA GCCTTCATCA TCCTGAGCGT GCTCACCTCC TACCCTATCC
1081TGCACTTCTG TGGGCGGGCG GTGGTGGAAG GCCTGTGGCT GCGCTACCAG GGGGTGCCAG
1141TGGAGGAGGA CGTGGGGCGG GAGCGGCGGC GGCGAGTGCT GCAGACGCTG GTCTGGTTCC
1201TGCTCACCCT GCTGCTGGCG CTCTTCATCC CTGACATCGG CAAGGTGATC TCAGTCATTG
1261GAGGCCTGGC CGCCTGCTTC ATCTTCGTCT TCCCAGGGCT GTGCCTCATT CAAGCCAAAC
1321TCTCTGAGAT GGAAGAGGTC AAACCAGCCA GCTGGTGGGT GCTGGTCAGC TACGGAGTCC
1381TCTTGGTCAC CCTGGGAGCC TTCATCTTCG GCCAGACCAC AGCCAACGCC ATCTTTGTGG
1441ATCTCTTGGC ATACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1501ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
1561CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGACTG ATCCGCTGCA ACAGCATCTC
1621AACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)