Construct: ORF TRCN0000468576
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017054.1_s317c1
- Derived from:
- ccsbBroadEn_02037
- DNA Barcode:
- GCCTGTGAGGCATTAGTATCCTCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- VNN2 (8875)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000468576
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8875 | VNN2 | vanin 2 | NM_004665.5 | 100% | 100% | |
| 2 | human | 8875 | VNN2 | vanin 2 | NM_078488.2 | 89.8% | 89.8% | 0_1ins159 |
| 3 | human | 8875 | VNN2 | vanin 2 | XM_006715593.3 | 89.7% | 89.6% | 0_1ins159;1051C>A |
| 4 | human | 8875 | VNN2 | vanin 2 | XM_011536231.1 | 88% | 87.6% | (many diffs) |
| 5 | human | 8875 | VNN2 | vanin 2 | NR_110143.1 | 72.9% | 1_125del;949_950insAGGA;1682_2129del | |
| 6 | human | 8875 | VNN2 | vanin 2 | XR_002956311.1 | 72.6% | (many diffs) | |
| 7 | human | 8875 | VNN2 | vanin 2 | NR_110144.1 | 63.1% | 1_125del;737_738ins212;1474_1921del | |
| 8 | human | 8875 | VNN2 | vanin 2 | NR_110145.1 | 62.4% | (many diffs) | |
| 9 | human | 8875 | VNN2 | vanin 2 | NR_034173.2 | 59.5% | 1_125del;660_661ins289;1397_1844del | |
| 10 | human | 8875 | VNN2 | vanin 2 | NM_001242350.2 | 57.5% | 57.5% | 535_536ins663 |
| 11 | human | 8875 | VNN2 | vanin 2 | XM_017011408.1 | 54.1% | 54% | 0_1ins714;496C>A |
| 12 | human | 8875 | VNN2 | vanin 2 | XM_017011409.1 | 54.1% | 54% | 0_1ins714;496C>A |
| 13 | human | 8875 | VNN2 | vanin 2 | NR_034174.2 | 48.3% | 1_125del;660_661ins529;1157_1604del | |
| 14 | human | 8875 | VNN2 | vanin 2 | NR_110146.1 | 33% | 1_125del;466_467ins856;830_1277del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1629
- ORF length:
- 1560
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggtcacttcc tcttttccaa tctctgtggc agtttttgcc ctaataaccc 121 tgcaggttgg tactcaggac agttttatag ctgcagtgta tgaacatgct gtcattttgc 181 caaataaaac agaaacacca gtttctcagg aggatgcctt gaatctcatg aacgagaata 241 tagacattct ggagacagcg atcaagcagg cagctgagca gggtgctcga atcattgtga 301 ctccagaaga tgcactttat ggatggaaat ttaccaggga aactgttttc ccttatctgg 361 aggatatccc agaccctcag gtgaactgga ttccgtgtca agacccccac agatttggtc 421 acacaccagt acaagcaaga ctcagctgcc tggccaagga caactctatc tatgtcttgg 481 caaatttggg ggacaaaaag ccatgtaatt cccgtgactc cacatgtcct cctaatggct 541 actttcaata caataccaat gtggtgtata atacagaagg aaaactcgtg gcacgttacc 601 ataagtacca cctgtactct gagcctcagt ttaatgtccc tgaaaagccg gagttggtga 661 ctttcaacac cgcatttgga aggtttggca ttttcacgtg ctttgatata ttcttctatg 721 atcctggtgt taccctggtg aaagatttcc atgtggacac catactgttt cccacagctt 781 ggatgaacgt tttgcccctt ttgacagcta ttgaattcca ttcagcttgg gcaatgggaa 841 tgggagttaa tcttcttgtg gccaacacac atcatgtcag cctaaatatg acaggaagtg 901 gtatttatgc accaaatggt cccaaagtgt atcattatga catgaagaca gagttgggaa 961 aacttctcct ttcagaggtg gattcacatc ccctatcctc gcttgcctac ccaacagctg 1021 ttaattggaa tgcctacgcc accaccatca aaccatttcc agtacagaaa aacactttca 1081 ggggatttat ttccagggat gggttcaact tcacagaact ttttgaaaat gcaggaaacc 1141 ttacagtctg tcaaaaggag ctttgctgtc atttaagcta cagaatgtta caaaaagaag 1201 agaatgaagt atacgttcta ggagctttta caggattaca tggccgaagg agaagagagt 1261 actggcaggt ctgcacaatg ctgaagtgca aaactactaa ttTGACAACT TGTGGACGGC 1321 CAGTAGAAAC TGCTTCTACA AGATTTGAAA TGTTCTCCCT CAGTGGCACA TTTGGAACAG 1381 AGTATGTTTT TCCTGAAGTG CTACTTACCG AAATTCATCT GTCACCTGGA AAATTTGAGG 1441 TGCTGAAAGA TGGGCGTTTG GTAAACAAGA ATGGATCATC TGGGCCTATA CTAACAGTGT 1501 CACTCTTTGG GAGGTGGTAC ACAAAGGACT CACTTTACAG CTCATGTGGG ACCAGCAATT 1561 CAGCAATAAC TTACCTGCTA ATATTCATAT TATTAATGAT CATAGCTTTG CAAAATATTG 1621 TAATGTTATT GCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 1681 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 1741 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAGCCTGT GAGGCATTAG TATCCTCGAC 1801 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt