Construct: ORF TRCN0000468736
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000721.1_s317c1
- Derived from:
- ccsbBroadEn_13854
- DNA Barcode:
- ACTACCAGTTGTTTTGACAGCCCA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- DMTN (2039)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000468736
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2039 | DMTN | dematin actin binding protein | NM_001114137.3 | 99.8% | 1% | 3delG;204C>T |
| 2 | human | 2039 | DMTN | dematin actin binding protein | NM_001114138.3 | 99.8% | 1% | 3delG;204C>T |
| 3 | human | 2039 | DMTN | dematin actin binding protein | NM_001302816.3 | 99.8% | 1% | 3delG;204C>T |
| 4 | human | 2039 | DMTN | dematin actin binding protein | NM_001323383.2 | 99.8% | 1% | 3delG;204C>T |
| 5 | human | 2039 | DMTN | dematin actin binding protein | NM_001323384.2 | 99.8% | 1% | 3delG;204C>T |
| 6 | human | 2039 | DMTN | dematin actin binding protein | NM_001323385.2 | 99.8% | 1% | 3delG;204C>T |
| 7 | human | 2039 | DMTN | dematin actin binding protein | XM_017013189.1 | 99.8% | 1% | 3delG;204C>T |
| 8 | human | 2039 | DMTN | dematin actin binding protein | XM_017013190.1 | 95.9% | 1% | 3delG;204C>T;246_247ins45 |
| 9 | human | 2039 | DMTN | dematin actin binding protein | XM_017013191.1 | 95.9% | 1% | 3delG;204C>T;246_247ins45 |
| 10 | human | 2039 | DMTN | dematin actin binding protein | XM_017013192.1 | 95.9% | 1% | 3delG;204C>T;246_247ins45 |
| 11 | human | 2039 | DMTN | dematin actin binding protein | NM_001114135.5 | 94.4% | .9% | 3delG;204C>T;956_1021del |
| 12 | human | 2039 | DMTN | dematin actin binding protein | NM_001114136.3 | 94.4% | .9% | 3delG;204C>T;956_1021del |
| 13 | human | 2039 | DMTN | dematin actin binding protein | NM_001323378.2 | 94.4% | .9% | 3delG;204C>T;956_1021del |
| 14 | human | 2039 | DMTN | dematin actin binding protein | NM_001323379.2 | 94.4% | .9% | 3delG;204C>T;956_1021del |
| 15 | human | 2039 | DMTN | dematin actin binding protein | NM_001323380.2 | 94.4% | .9% | 3delG;204C>T;956_1021del |
| 16 | human | 2039 | DMTN | dematin actin binding protein | NM_001323381.2 | 94.4% | .9% | 3delG;204C>T;956_1021del |
| 17 | human | 2039 | DMTN | dematin actin binding protein | NM_001323382.2 | 94.4% | .9% | 3delG;204C>T;956_1021del |
| 18 | human | 2039 | DMTN | dematin actin binding protein | NM_001978.5 | 94.4% | .9% | 3delG;204C>T;956_1021del |
| 19 | human | 2039 | DMTN | dematin actin binding protein | NM_001114139.4 | 93.2% | .8% | 3delG;17_18ins75;129C>T |
| 20 | human | 2039 | DMTN | dematin actin binding protein | NM_001323387.2 | 93.2% | .8% | 3delG;17_18ins75;129C>T |
| 21 | human | 2039 | DMTN | dematin actin binding protein | XM_017013195.1 | 93.2% | .8% | 3delG;17_18ins75;129C>T |
| 22 | human | 2039 | DMTN | dematin actin binding protein | XM_017013196.2 | 93.2% | .8% | 3delG;17_18ins75;129C>T |
| 23 | human | 2039 | DMTN | dematin actin binding protein | XM_017013197.1 | 93.2% | .8% | 3delG;17_18ins75;129C>T |
| 24 | human | 2039 | DMTN | dematin actin binding protein | XM_017013198.1 | 93.2% | .8% | 3delG;17_18ins75;129C>T |
| 25 | human | 2039 | DMTN | dematin actin binding protein | NM_001323389.2 | 90.6% | 1% | (many diffs) |
| 26 | human | 2039 | DMTN | dematin actin binding protein | NM_001323390.2 | 90.6% | 1% | (many diffs) |
| 27 | human | 2039 | DMTN | dematin actin binding protein | XM_011544435.1 | 90.6% | 1% | (many diffs) |
| 28 | human | 2039 | DMTN | dematin actin binding protein | NM_001323398.2 | 89.3% | .8% | (many diffs) |
| 29 | human | 2039 | DMTN | dematin actin binding protein | NM_001323399.2 | 89.3% | .8% | (many diffs) |
| 30 | human | 2039 | DMTN | dematin actin binding protein | NM_001323400.2 | 89.3% | .8% | (many diffs) |
| 31 | human | 2039 | DMTN | dematin actin binding protein | NM_001323401.2 | 89.3% | .8% | (many diffs) |
| 32 | human | 2039 | DMTN | dematin actin binding protein | NM_001323391.2 | 88.2% | .7% | (many diffs) |
| 33 | human | 2039 | DMTN | dematin actin binding protein | NM_001323392.2 | 88.2% | .7% | (many diffs) |
| 34 | human | 2039 | DMTN | dematin actin binding protein | NM_001323393.2 | 88.2% | .7% | (many diffs) |
| 35 | human | 2039 | DMTN | dematin actin binding protein | NM_001323394.2 | 88.2% | .7% | (many diffs) |
| 36 | human | 2039 | DMTN | dematin actin binding protein | NM_001323395.2 | 88.2% | .7% | (many diffs) |
| 37 | human | 2039 | DMTN | dematin actin binding protein | NM_001323396.2 | 88.2% | .7% | (many diffs) |
| 38 | human | 2039 | DMTN | dematin actin binding protein | NM_001323397.2 | 88.2% | .7% | (many diffs) |
| 39 | human | 2039 | DMTN | dematin actin binding protein | NM_001302817.3 | 84.5% | .8% | (many diffs) |
| 40 | human | 2039 | DMTN | dematin actin binding protein | NM_001323388.2 | 84.5% | .8% | (many diffs) |
| 41 | human | 2039 | DMTN | dematin actin binding protein | XM_017013193.1 | 84.5% | .8% | (many diffs) |
| 42 | human | 2039 | DMTN | dematin actin binding protein | XM_017013194.1 | 84.5% | .8% | (many diffs) |
| 43 | human | 2039 | DMTN | dematin actin binding protein | XR_002956606.1 | 44.5% | (many diffs) | |
| 44 | human | 2039 | DMTN | dematin actin binding protein | XR_002956616.1 | 44.1% | (many diffs) | |
| 45 | human | 2039 | DMTN | dematin actin binding protein | XR_002956614.1 | 43.9% | (many diffs) | |
| 46 | human | 2039 | DMTN | dematin actin binding protein | XR_002956615.1 | 43.3% | (many diffs) | |
| 47 | human | 2039 | DMTN | dematin actin binding protein | XR_002956607.1 | 43.3% | (many diffs) | |
| 48 | human | 2039 | DMTN | dematin actin binding protein | XR_002956608.1 | 43.2% | (many diffs) | |
| 49 | human | 2039 | DMTN | dematin actin binding protein | XR_002956611.1 | 42.5% | (many diffs) | |
| 50 | human | 2039 | DMTN | dematin actin binding protein | XR_002956612.1 | 42.3% | (many diffs) | |
| 51 | human | 2039 | DMTN | dematin actin binding protein | XR_002956605.1 | 42.1% | (many diffs) | |
| 52 | human | 2039 | DMTN | dematin actin binding protein | XR_002956619.1 | 42% | (many diffs) | |
| 53 | human | 2039 | DMTN | dematin actin binding protein | XR_002956620.1 | 41.5% | (many diffs) | |
| 54 | human | 2039 | DMTN | dematin actin binding protein | XR_002956610.1 | 40.7% | (many diffs) | |
| 55 | human | 2039 | DMTN | dematin actin binding protein | XR_002956617.1 | 40.6% | (many diffs) | |
| 56 | human | 2039 | DMTN | dematin actin binding protein | XR_002956604.1 | 38.8% | (many diffs) | |
| 57 | human | 2039 | DMTN | dematin actin binding protein | XR_002956613.1 | 38.3% | (many diffs) | |
| 58 | human | 2039 | DMTN | dematin actin binding protein | XR_002956609.1 | 37.3% | (many diffs) | |
| 59 | mouse | 13829 | Dmtn | dematin actin binding protein | NM_001252663.1 | 89.4% | 1% | (many diffs) |
| 60 | mouse | 13829 | Dmtn | dematin actin binding protein | NM_013514.4 | 89.4% | 1% | (many diffs) |
| 61 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_017315839.1 | 89.4% | 1% | (many diffs) |
| 62 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_011244950.2 | 85.2% | .9% | (many diffs) |
| 63 | mouse | 13829 | Dmtn | dematin actin binding protein | NM_001252662.1 | 84.6% | .9% | (many diffs) |
| 64 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_006518530.3 | 84.6% | .9% | (many diffs) |
| 65 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_006518531.2 | 84.6% | .9% | (many diffs) |
| 66 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_006518532.2 | 84.6% | .9% | (many diffs) |
| 67 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_017315838.1 | 84.6% | .9% | (many diffs) |
| 68 | mouse | 13829 | Dmtn | dematin actin binding protein | NM_001252665.1 | 83.5% | .8% | (many diffs) |
| 69 | mouse | 13829 | Dmtn | dematin actin binding protein | NM_001252666.1 | 83.5% | .8% | (many diffs) |
| 70 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_006518542.3 | 83.5% | .8% | (many diffs) |
| 71 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_017315840.1 | 83.5% | .8% | (many diffs) |
| 72 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_006518522.2 | 80.8% | .9% | (many diffs) |
| 73 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_006518523.3 | 80.8% | .9% | (many diffs) |
| 74 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_006518525.3 | 80.8% | .9% | (many diffs) |
| 75 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_006518526.2 | 80.8% | .9% | (many diffs) |
| 76 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_006518527.2 | 80.8% | .9% | (many diffs) |
| 77 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_011244949.2 | 80.8% | .9% | (many diffs) |
| 78 | mouse | 13829 | Dmtn | dematin actin binding protein | NM_001252664.1 | 79% | .7% | (many diffs) |
| 79 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_006518539.2 | 79% | .7% | (many diffs) |
| 80 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_006518540.3 | 79% | .7% | (many diffs) |
| 81 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_006518541.2 | 79% | .7% | (many diffs) |
| 82 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_006518533.3 | 75.4% | .7% | (many diffs) |
| 83 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_006518534.2 | 75.4% | .7% | (many diffs) |
| 84 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_006518535.3 | 75.4% | .7% | (many diffs) |
| 85 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_006518536.2 | 75.4% | .7% | (many diffs) |
| 86 | mouse | 13829 | Dmtn | dematin actin binding protein | XM_006518537.2 | 75.4% | .7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 108
- ORF length:
- 42
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgaa cggctgcaga agcaaccact tacctccccc gggagcgtga gcccctcccg 121 agattccagt gtgcctggct ctccctccag catcgtggcc aagatggaca atcaggtgct 181 gggctacaag gacctggctg ccatccccaa ggacaaggcc atcctggaca tcgagcggcc 241 cgacctcatg atctacgagc ctcactttac ttattccctc ctggaacacg tggagctgcc 301 tcgcagccgc gagcgctcgc tgtcacccaa atccacatcc cccccaccat ccccagaggt 361 gtgggcggac agccggtcgc ctggaatcat ctctcaggcc tcggccccca gaaccactgg 421 aaccccccgg accagcctgc cccatttcca ccaccctgag acctcccgcc cagattccaa 481 catctacaag aagcctccca tctataagca gagagagtcc gtgggaggca gccctcagac 541 caagcacctc atcgaggatc tcatcatcga gtcatccaag tttcctgcag cccagccccc 601 agaccccaac cagccagcca aaatcgaaac cgactactgg ccatgccccc cgtctctggc 661 tgttgtggag acagaatgga ggaagcggaa ggcgtctcgg aggggagcag aggaagagga 721 ggaggaggaa gatgacgact ctggagagga gatgaaggct ctcagggagc gtcagagaga 781 ggaactcagt aaggttactt ccaacttggg aaagatgatc ttGAAAGAAG AGATGGAAAA 841 GTCATTGCCG ATCCGAAGGA AAACCCGCTC TCTGCCTGAC CGGACACCCT TCCATACCTC 901 CTTGCACCAG GGAACGTCTA AATCTTCCTC TCTCCCCGCC TATGGCAGGA CCACCCTGAG 961 CCGGCTACAG TCCACAGAGT TCAGCCCATC AGGGAGTGAG ACTGGAAGCC CAGGCCTGCA 1021 GATCTATCCC TATGAAATGC TAGTGGTGAC CAACAAGGGG CGAACCAAGC TGCCACCGGG 1081 GGTGGATCGG ATGCGGCTTG AGAGGCATCT GTCTGCCGAG GACTTCTCAA GGGTATTTGC 1141 CATGTCCCCT GAAGAGTTTG GCAAGCTGGC TCTGTGGAAG CGGAATGAGC TCAAGAAGAA 1201 GGCCTCTCTC TTCTGCCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC 1261 TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT 1321 TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA CTACCAGTTG TTTTGACAGC 1381 CCAACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag att