Construct: ORF TRCN0000468749
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011135.1_s317c1
- Derived from:
- ccsbBroadEn_13044
- DNA Barcode:
- CTACTTATAAACTAGTATTAAAAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C1QTNF3 (114899)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000468749
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 114899 | C1QTNF3 | C1q and TNF related 3 | NM_030945.4 | 51% | 50.8% | 1_360del;640A>G |
| 2 | human | 114899 | C1QTNF3 | C1q and TNF related 3 | NM_181435.6 | 39.3% | 39.1% | 1_579del;859A>G |
| 3 | human | 100534612 | C1QTNF3-AMACR | C1QTNF3-AMACR readthrough (... | NR_037951.1 | 10.4% | 1_387del;667A>G;766_3612del | |
| 4 | human | 114899 | C1QTNF3 | C1q and TNF related 3 | NR_146599.1 | 8.8% | 1_1170del;1450A>G;1549_4276del | |
| 5 | mouse | 81799 | C1qtnf3 | C1q and tumor necrosis fact... | NM_030888.4 | 47.1% | 50.4% | (many diffs) |
| 6 | mouse | 81799 | C1qtnf3 | C1q and tumor necrosis fact... | NM_001204134.1 | 36.3% | 38.8% | (many diffs) |
| 7 | mouse | 81799 | C1qtnf3 | C1q and tumor necrosis fact... | XR_383836.3 | 14.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 91
- ORF end:
- 469
- ORF length:
- 378
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTTCTTC CATTTCAGGT GTCGTGAGGC TAGCATCGAT 61 TGATCAACAA GTTTGTACAA AAAAGTTGGC ATGGCTTCTC TGGCAACCCA CTTCAGCAAT 121 CAGAACAGTG GGATTATCTT CAGCAGTGTT GAGACCAACA TTGGAAACTT CTTTGATGTC 181 ATGACTGGTA GATTTGGGGC CCCAGTATCA GGTGTGTATT TCTTCACCTT CAGCATGATG 241 AAGCATGAGG ATGTTGAGGA AGTGTATGTG TACCTTATGC ACAATGGCAA CACAGTCTTC 301 AGCATGTACA GCTATGAAAT GAAGGGCAAA TCAGATACAT CCAGCAATCA TGCTGTGCTG 361 AAGCTAGCCG AAGGGGATGA GGTTTGGCTG CGAATGGGCA ATGGCGCTCT CCATGGGGAC 421 CACCAACGCT TCTCCACCTT TGCAGGATTC CTGCTCTTTG AAACTAAGTA CCCAACTTTC 481 TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT 541 ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT 601 TGTGGAAAGG ACGACTACTT ATAAACTAGT ATTAAAATAC GCGTTAAGTC gacaatcaac 661 ctctggatta caaaatttgt gaaagatt