Construct: ORF TRCN0000468836

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009500.1_s317c1
Derived from:
ccsbBroadEn_06889
DNA Barcode:
CCGGATGGGTGTAGACAACCATGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RPN2 (6185)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468836
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6185 RPN2 ribophorin II NM_002951.5 99.9% 100% 1825C>T
2 human 6185 RPN2 ribophorin II NM_001324303.2 98.3% 98.4% 1825C>T;1881_1882insAGAAC;1889_1914del
3 human 6185 RPN2 ribophorin II NM_001324305.1 97.4% 97.5% 480_527del;1873C>T
4 human 6185 RPN2 ribophorin II NM_001324304.1 97.4% 97.2% 1825C>T;1883_1930del
5 human 6185 RPN2 ribophorin II NM_001324301.1 95.1% 94.8% 480_527del;1873C>T;1931_1978del
6 human 6185 RPN2 ribophorin II NM_001324302.1 94.8% 94.9% 1580_1581ins96;1729C>T
7 human 6185 RPN2 ribophorin II XM_006723852.3 92.5% 92.5% 480_527del;1628_1629ins96;1777C>T
8 human 6185 RPN2 ribophorin II NM_001135771.2 92.5% 92.2% 205_206ins96;1729C>T;1787_1834del
9 human 6185 RPN2 ribophorin II NM_001324299.1 92.5% 92.2% 1580_1581ins96;1729C>T;1787_1834del
10 human 6185 RPN2 ribophorin II XM_006723851.3 90.2% 90% (many diffs)
11 human 6185 RPN2 ribophorin II NM_001324306.1 73% 72.4% (many diffs)
12 mouse 20014 Rpn2 ribophorin II NM_019642.4 88.3% 92.3% (many diffs)
13 mouse 20014 Rpn2 ribophorin II XM_006499022.2 86.1% 89.7% (many diffs)
14 mouse 20014 Rpn2 ribophorin II XM_006499023.2 85.6% 89% (many diffs)
15 mouse 20014 Rpn2 ribophorin II XM_006499021.3 85% 88.6% (many diffs)
16 mouse 20014 Rpn2 ribophorin II XM_011239388.1 83.7% 87% (many diffs)
17 mouse 20014 Rpn2 ribophorin II XM_006499024.3 83% 86.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1959
ORF length:
1893
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc gccgccgggt tcaagcactg tcttcctgtt ggccctgaca atcatagcca
121gcacctgggc tctgacgccc actcactacc tcaccaagca tgacgtggag agactaaaag
181cctcgctgga tcgccctttc acaaatttgg aatctgcctt ctactccatc gtgggactca
241gcagccttgg tgctcaggtg ccagatgcaa agaaagcatg tacctacatc agatctaacc
301ttgatcccag caatgtggat tccctcttct acgctgccca ggccagccag gccctctcag
361gatgtgagat ctctatttca aatgagacca aagatctgct tctggcagct gtcagtgagg
421actcatctgt tacccagatc taccatgcag ttgcagctct aagtggcttt ggccttccct
481tggcatccca agaagcactc agtgccctta ctgctcgtct cagcaaggag gagactgtgc
541tggcaacagt ccaggctctg cagacagcat cccacctgtc ccagcaggct gacctgagga
601gcatcgtgga ggagattgag gaccttgttg ctcgcctgga tgaactcggg ggcgtgtatc
661tccagtttga agaaggactg gaaacaacag cgttatttgt ggctgccacc tacaagctca
721tggatcatgt ggggactgag ccatccatta aggaggatca ggtcatccag ctgatgaacg
781cgatcttcag caagaagaac tttgagtccc tctccgaagc cttcagcgtg gcctctgcag
841ctgctgtgct ctcgcataat cgctaccacg tgccagttgt ggttgtgcct gagggctctg
901cttccgacac tcatgaacag gctatcttgc ggttgcaagt caccaatgtt ctgtctcagc
961ctctgactca ggccactgtt aaactagaac atgctaaatc tgttgcttcc agagccactg
1021tcctccagaa gacatccttc acccctgtag gggatgtttt tgaactaaat ttcatgaacg
1081tcaaattttc cagtggttat tatgacttcc ttgtcgaagt tgaaggtgac aaccggtata
1141ttgcaaatac cgtagagctc agagtcaaga tctccactga agttggcatc acaaatgttg
1201atctttccac cgtggataag gatcagagca ttgcacccaa aactacccgg gtgacatacc
1261cagccaaagc caagggcaca ttcatcgcag acagccacca gaacttcgcc ttgttcttcc
1321agctggtaga tgtgaacact ggtgctgaac tcactcctca ccagacattt gtccgactcc
1381ataaccagaa gactggccag gaagtggtgt ttgttgccga gccagacaac aagaacgtgt
1441acaagtttga actggatacc tctgaaagaa agattgaatt tgactctgcc tctggcacct
1501acactctcta cttaatcatt ggagatgcca ctttgaagaa cccaatcctc tggaatgtgg
1561ctgatgtggt catcaagttc ccTGAGGAAG AAGCTCCCTC GACTGTCTTG TCCCAGAACC
1621TTTTCACTCC AAAACAGGAA ATTCAGCACC TGTTCCGCGA GCCTGAGAAG AGGCCCCCCA
1681CCGTGGTGTC CAATACATTC ACTGCCCTGA TCCTCTCGCC GTTGCTTCTG CTCTTCGCTC
1741TGTGGATCCG GATTGGTGCC AATGTCTCCA ACTTCACTTT TGCTCCTAGC ACGATTATAT
1801TTCACCTGGG ACATGCTGCT ATGCTGGGAC TCATGTATGT CTACTGGACT CAGCTCAACA
1861TGTTCCAGAC CTTGAAGTAC CTGGCCATCT TGGGCAGTGT GACGTTTCTG GCTGGCAATC
1921GGATGCTGGC CCAGCAGGCA GTCAAGAGAA CAGCACATTA CCCAACTTTC TTGTACAAAG
1981TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
2041GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
2101ACGACCGGAT GGGTGTAGAC AACCATGTAC GCGTTAAGTC gacaatcaac ctctggatta
2161caaaatttgt gaaagatt

Download FASTA (ORF) (Full)