Construct: ORF TRCN0000469134

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012009.1_s317c1
Derived from:
ccsbBroadEn_05732
DNA Barcode:
GATCCATCCTAGTGGCTCACGGAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CSAG2 (728461)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469134
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 389903 CSAG3 CSAG family member 3 NM_001129828.3 100% 100%
2 human 102723547 CSAG2 CSAG family member 2 XM_017030023.1 99.6% 99% 187A>G
3 human 389903 CSAG3 CSAG family member 3 NM_001129826.3 86.6% 86.6% 264_314del
4 human 389903 CSAG3 CSAG family member 3 XM_024452379.1 86.6% 86.6% 264_314del
5 human 102723547 CSAG2 CSAG family member 2 XM_006724857.3 86.3% 85.8% 187A>G;264_314del
6 human 158511 CSAG1 chondrosarcoma associated g... NM_001102576.3 66% 59% (many diffs)
7 human 158511 CSAG1 chondrosarcoma associated g... NM_153478.3 66% 59% (many diffs)
8 human 102723547 CSAG2 CSAG family member 2 XR_938529.2 38% (many diffs)
9 human 100130935 CSAG4 CSAG family member 4 (pseud... NR_073432.1 36.8% (many diffs)
10 human 389903 CSAG3 CSAG family member 3 NR_130638.1 36.5% (many diffs)
11 human 102723547 CSAG2 CSAG family member 2 XR_938528.2 24% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
399
ORF length:
330
Sequence:
1TCTTCCATTT CAGGTGTCGT GAGGCTAGCA TCGATTGATC AACAAGTTTG TACAAAAAAG
61TTGGCACCAT GTGGATGGGC CTCATCCAAT TAGTTGAAGG TGTTAAGAGA AAAGACCAAG
121GTTTCCTGGA AAAGGAATTC TACCACAAGA CTAACATAAA AATGCGCTGT GAGTTTCTAG
181CCTGCTGGCC TGCCTTCACT GTCCTGGGGG AGGCTTGGAG AGACCAGGTG GACTGGAGTA
241GACTGTTGAG AGACGCTGGT CTGGTGAAGA TGTCCAGGAA ACCACGAGCC TCCAGCCCAT
301TGTCCAACAA CCACCCACCA ACACCAAAGA GGTTCCCAAG ACAACCCGGA AGGGAAAAGG
361GACCCATCAA GGAAGTTCCA GGAACAAAAG GCTCTCCCTT GCCAACTTTC TTGTACAAAG
421TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
481GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
541ACGAGATCCA TCCTAGTGGC TCACGGACAC GCGTTAAGTC gacaatcaac ctctggatta
601caaaatttgt gaaagatt

Download FASTA (ORF) (Full)