Construct: ORF TRCN0000469151
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011719.1_s317c1
- Derived from:
- ccsbBroadEn_04293
- DNA Barcode:
- TATCTCGATTCCAATCGGTCAGCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC25A18 (83733)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469151
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83733 | SLC25A18 | solute carrier family 25 me... | NM_001303484.1 | 100% | 100% | |
| 2 | human | 83733 | SLC25A18 | solute carrier family 25 me... | NM_031481.3 | 100% | 100% | |
| 3 | human | 83733 | SLC25A18 | solute carrier family 25 me... | XM_011546151.2 | 100% | 100% | |
| 4 | human | 83733 | SLC25A18 | solute carrier family 25 me... | XM_011546152.1 | 100% | 100% | |
| 5 | human | 83733 | SLC25A18 | solute carrier family 25 me... | XM_011546153.3 | 100% | 100% | |
| 6 | human | 83733 | SLC25A18 | solute carrier family 25 me... | XM_011546154.2 | 100% | 100% | |
| 7 | human | 83733 | SLC25A18 | solute carrier family 25 me... | XM_017028968.1 | 100% | 100% | |
| 8 | human | 83733 | SLC25A18 | solute carrier family 25 me... | XM_017028970.2 | 86.3% | 86.3% | 0_1ins129 |
| 9 | human | 83733 | SLC25A18 | solute carrier family 25 me... | XM_017028971.2 | 86.3% | 86.3% | 0_1ins129 |
| 10 | human | 83733 | SLC25A18 | solute carrier family 25 me... | XM_017028972.2 | 86.3% | 86.3% | 0_1ins129 |
| 11 | human | 83733 | SLC25A18 | solute carrier family 25 me... | XM_017028973.2 | 86.3% | 86.3% | 0_1ins129 |
| 12 | human | 83733 | SLC25A18 | solute carrier family 25 me... | XM_017028974.2 | 86.3% | 86.3% | 0_1ins129 |
| 13 | human | 83733 | SLC25A18 | solute carrier family 25 me... | XM_017028975.2 | 86.3% | 86.3% | 0_1ins129 |
| 14 | human | 83733 | SLC25A18 | solute carrier family 25 me... | XM_011546150.2 | 86% | 86% | 1_153del |
| 15 | human | 83733 | SLC25A18 | solute carrier family 25 me... | XM_011546149.2 | 76.8% | 76.8% | 1_285del |
| 16 | human | 83733 | SLC25A18 | solute carrier family 25 me... | XR_002958717.1 | 22.4% | (many diffs) | |
| 17 | human | 83733 | SLC25A18 | solute carrier family 25 me... | XR_951210.3 | 18.5% | 1_1496del;1783_1784ins119;2323_4345del | |
| 18 | mouse | 71803 | Slc25a18 | solute carrier family 25 (m... | NM_001081048.2 | 83.9% | 86.5% | (many diffs) |
| 19 | mouse | 71803 | Slc25a18 | solute carrier family 25 (m... | XM_006506649.3 | 83.9% | 86.5% | (many diffs) |
| 20 | mouse | 71803 | Slc25a18 | solute carrier family 25 (m... | XM_006506650.3 | 83.9% | 86.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1011
- ORF length:
- 945
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgac ccaccaggat ctgagcatca cagccaaact catcaatgga ggtgtagcag 121 ggctcgtggg ggtgacctgc gtgttcccca tcgacttggc caagactcgc ctgcagaacc 181 agcatgggaa agccatgtac aaaggaatga tcgactgcct gatgaagacg gctcgggcgg 241 agggcttctt cggcatgtac cgaggggctg cagtgaacct cactctggtc actccagaga 301 aggccatcaa gctggcggcc aacgactttt tccggcggct gctcatggaa gatgggatgc 361 agcggaacct gaagatggag atgcttgccg ggtgtggggc tgggatgtgc caggtcgtgg 421 tgacctgtcc catggaaatg ctcaagattc agctgcagga tgctggacgc ctggccgtcc 481 atcatcaggg ctcggcctca gcaccctcca cctccaggtc ctacacaact ggttcggctt 541 ccacccacag gcgcccctct gccaccctca ttgcctggga gctgctccgc actcagggcc 601 tggctgggct ctacaggggc ctgggtgcca ctctcctcag agacattcct ttctccatca 661 tctacttccc actgtttgcc aaCCTTAACA ACCTGGGGTT CAACGAGCTC GCCGGTAAGG 721 CGTCCTTTGC ACATTCCTTC GTGTCAGGCT GTGTGGCAGG TTCCATAGCT GCGGTCGCAG 781 TGACGCCTCT AGATGTTCTG AAAACTCGAA TCCAAACCCT CAAGAAAGGC CTGGGCGAGG 841 ACATGTACAG TGGGATCACC GACTGTGCCA GGAAACTCTG GATTCAGGAG GGACCATCTG 901 CCTTCATGAA AGGCGCTGGC TGCCGGGCAC TGGTCATAGC ACCTCTCTTT GGGATTGCTC 961 AAGGGGTCTA TTTTATTGGG ATTGGAGAGC GCATCTTAAA GTGTTTTGAC TACCCAACTT 1021 TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT 1081 CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT 1141 CTTGTGGAAA GGACGATATC TCGATTCCAA TCGGTCAGCC ACGCGTTAAG TCgacaatca 1201 acctctggat tacaaaattt gtgaaagatt