Construct: ORF TRCN0000469367
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001129.1_s317c1
- Derived from:
- ccsbBroadEn_13403
- DNA Barcode:
- CCAGACGCTTTCCTAACCTTTACA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATAD3C (219293)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469367
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 219293 | ATAD3C | ATPase family AAA domain co... | NM_001039211.3 | 12.7% | .5% | 1_1052del;1233_1234ins185 |
| 2 | human | 55210 | ATAD3A | ATPase family AAA domain co... | NM_001170536.2 | 9.4% | 1.6% | (many diffs) |
| 3 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XM_005244806.3 | 8.8% | 4.4% | (many diffs) |
| 4 | human | 55210 | ATAD3A | ATPase family AAA domain co... | NM_001170535.3 | 8.2% | 1.4% | (many diffs) |
| 5 | human | 55210 | ATAD3A | ATPase family AAA domain co... | XM_024448098.1 | 7.9% | 5.9% | (many diffs) |
| 6 | human | 55210 | ATAD3A | ATPase family AAA domain co... | NM_018188.5 | 7.7% | 1.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 459
- ORF length:
- 366
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA CCATGCCGGA AGATCGCACA GCTGGCCGTG 121 TCCTGGCAGG CCACGGCGTA TGCCTCCAAG GACGGGGTCC TGACCGAGGC CATGATGGAC 181 GCCTGCGTGC AAGACTTTGT CCAGCAGCAC CAGCAGATGA TGCGCTGGCT GAAGGGGGAG 241 AGGCCTGGGC CCGAGGACGA GCAACCCTCA TCCTGAGTCC ATGGGGAGAC CACACCTCAC 301 GGAGCCTGGC CGCGGACCCC TCCCACCCCT GCCTTTGCGG CCCCGCACAT TTAGGAAATA 361 CTCCCCGTAA TAAAGTCCCA CGGGGGCCGC ACCGCTGTGT CTATTGGCTG ACACGGGGCG 421 GGGTTTGGGG CCCCCTAACG TCCCCCTGGG GTCAAAGGTT GCCAACTTTC TTGTACAAAG 481 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 541 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 601 ACGACCAGAC GCTTTCCTAA CCTTTACAAC GCGTTAAGTC gacaatcaac ctctggatta 661 caaaatttgt gaaagatt