Construct: ORF TRCN0000469608
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015686.1_s317c1
- Derived from:
- ccsbBroadEn_11423
- DNA Barcode:
- AGTGCGCAACGAGGCCGGCCCCCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MFAP3L (9848)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469608
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9848 | MFAP3L | microfibril associated prot... | NM_021647.8 | 24.7% | 24.4% | (many diffs) |
| 2 | human | 9848 | MFAP3L | microfibril associated prot... | XM_017008868.1 | 24.7% | 24.4% | (many diffs) |
| 3 | human | 9848 | MFAP3L | microfibril associated prot... | XM_017008869.2 | 24.7% | 24.4% | (many diffs) |
| 4 | human | 9848 | MFAP3L | microfibril associated prot... | XM_017008870.2 | 24.7% | 24.4% | (many diffs) |
| 5 | human | 9848 | MFAP3L | microfibril associated prot... | XM_017008871.1 | 24.7% | 24.4% | (many diffs) |
| 6 | human | 9848 | MFAP3L | microfibril associated prot... | XM_017008864.2 | 23.2% | 22.9% | (many diffs) |
| 7 | human | 9848 | MFAP3L | microfibril associated prot... | XM_017008865.2 | 23.2% | 22.9% | (many diffs) |
| 8 | human | 9848 | MFAP3L | microfibril associated prot... | XM_017008866.1 | 23.2% | 22.9% | (many diffs) |
| 9 | human | 9848 | MFAP3L | microfibril associated prot... | XM_017008867.2 | 23.2% | 22.9% | (many diffs) |
| 10 | human | 9848 | MFAP3L | microfibril associated prot... | XM_005263366.3 | 22.9% | 22.6% | (many diffs) |
| 11 | mouse | 71306 | Mfap3l | microfibrillar-associated p... | NM_001177881.1 | 22.3% | 20.7% | (many diffs) |
| 12 | mouse | 71306 | Mfap3l | microfibrillar-associated p... | NM_001177882.1 | 22.3% | 20.7% | (many diffs) |
| 13 | mouse | 71306 | Mfap3l | microfibrillar-associated p... | NM_027756.5 | 22.3% | 20.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 396
- ORF length:
- 306
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGATCGATT GAAGAGCCAT CTGACTGTGT 121 GCTTTCTACC TTCTGTGCCC TTTTTAATCC TAGTATCCAC TCTAGCCACC GCTAAGAGTG 181 TGACTAACAG CACTTTAAAT GGCACTAACG TGGTCTTGGG CTCTGTGCCC GTAATCATTG 241 CCAGAACTGA CCATATCATA GTCAAGGAAG GGAACAGTGC CTTGATTAAC TGTAGTGTTT 301 ATGGCATCCC TGACCCACAG TTCAAGTGGT ATAATTCCAT TGGCAAGCTG CTGAAAGAAG 361 AAGAGGATGA GAAGGAGAGA GGAGGAGGTA GGCTTTACCC AACTTTCTTG TACAAAGTGG 421 TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA 481 CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG 541 AAGTGCGCAA CGAGGCCGGC CCCCAACGCG TTAAGTCgac aatcaacctc tggattacaa 601 aatttgtgaa agatt