Construct: ORF TRCN0000469827

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017269.1_s317c1
Derived from:
ccsbBroadEn_12791
DNA Barcode:
TGTCACCAGTCCGACCCCCCACAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SETD3 (84193)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469827
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84193 SETD3 SET domain containing 3, ac... NM_199123.2 96.7% 96.2% (many diffs)
2 human 84193 SETD3 SET domain containing 3, ac... XM_011537235.1 96.7% 96.2% (many diffs)
3 human 84193 SETD3 SET domain containing 3, ac... NM_032233.3 48.7% 48.1% (many diffs)
4 human 84193 SETD3 SET domain containing 3, ac... XM_011537231.2 48.7% 48.1% (many diffs)
5 human 84193 SETD3 SET domain containing 3, ac... XM_011537232.3 48.7% 48.1% (many diffs)
6 human 84193 SETD3 SET domain containing 3, ac... XM_017021699.1 48.7% 48.1% (many diffs)
7 human 84193 SETD3 SET domain containing 3, ac... XM_017021700.1 48.7% 48.1% (many diffs)
8 human 84193 SETD3 SET domain containing 3, ac... XM_011537233.2 48.4% 43.9% (many diffs)
9 human 84193 SETD3 SET domain containing 3, ac... XM_017021701.1 48.4% 43.9% (many diffs)
10 human 84193 SETD3 SET domain containing 3, ac... XM_005268127.3 32% 29.4% (many diffs)
11 human 84193 SETD3 SET domain containing 3, ac... XM_011537234.1 32% 29.4% (many diffs)
12 human 84193 SETD3 SET domain containing 3, ac... XM_017021702.1 30.3% 23.4% (many diffs)
13 mouse 52690 Setd3 SET domain containing 3 XM_006516084.3 52.9% 51.7% (many diffs)
14 mouse 52690 Setd3 SET domain containing 3 XM_017315134.1 46.2% 42.7% (many diffs)
15 mouse 52690 Setd3 SET domain containing 3 XM_017315133.1 45.6% 42.2% (many diffs)
16 mouse 52690 Setd3 SET domain containing 3 NM_028262.3 44.8% 47.1% (many diffs)
17 mouse 52690 Setd3 SET domain containing 3 XM_006516079.3 44.3% 46.5% (many diffs)
18 mouse 52690 Setd3 SET domain containing 3 XM_006516080.3 39.5% 41.2% (many diffs)
19 mouse 52690 Setd3 SET domain containing 3 XM_006516078.3 31% 29.7% (many diffs)
20 mouse 52690 Setd3 SET domain containing 3 XM_006516082.3 24.8% 26% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
942
ORF length:
876
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg taagaagagt cgagtaaaaa ctcagaaatc tggcactggt gctacagcaa
121ctgtgtcacc aaaggaaatc ttgaacctga ccagtgagct gctgcagaaa tgcagcagtc
181cggcgcctgg cccaggaaaa gagtgggaag agtatgtgca gatccggact ctggttgaga
241aaatacggaa aaagcaaaaa ggtctgtccg ttacttttga tggaaaaaga gaagattact
301ttcctgatct aatgaaatgg gcctctgaaa atggggcttc tgtcgagggt tttgaaatgg
361ttaacttcaa agaagagggc tttggtttga gagcaacaag agatatcaag gcagaagaat
421tgtttttatg ggttccacga aaattgctaa tgactgttga atctgctaaa aattcagtgt
481tggggccctt atattctcaa gaccgaatcc ttcaagccat gggaaacatc gcactggCCT
541TTCATTTGCT GTGTGAGCGA GCCAGCCCTA ACTCCTTCTG GCAGCCCTAT ATTCAAACCC
601TCCCCAGTGA ATATGACACT CCTCTCTACT TTGAAGAAGA TGAAGTTCGG TATCTTCAGT
661CCACACAAGC TATACATGAT GTCTTCAGCC AGTATAAAAA CACAGCTCGA CAGTACGCCT
721ACTTCTATAA AGTCATCCAG ACCCATCCTC ATGCCAACAA ACTACCCTTG AAGGATTCTT
781TCACTTACGA GGACTACAGG TGGGCAGTCT CTTCTGTTAT GACGAGGCAA AACCAAATTC
841CCACAGAGGA TGGTTCCCGC GTGACCCTGG CTCTGATTCC TTTATGGGAT ATGTGTAACC
901ACACCAACGG CCTGGTAACG ACCTCTTCCC CTGTGTTGTG TTGCCCAACT TTCTTGTACA
961AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
1021AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
1081AGGACGATGT CACCAGTCCG ACCCCCCACA CACGCGTTAA GTCgacaatc aacctctgga
1141ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)