Construct: ORF TRCN0000470097
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004604.1_s317c1
- Derived from:
- ccsbBroadEn_16018
- DNA Barcode:
- ACGGGGGTTCCTAGATATATGTCT
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- DRC3 (83450)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000470097
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83450 | DRC3 | dynein regulatory complex s... | NM_001130090.1 | 81.6% | 64% | 456C>T;571C>T;994_1279del |
| 2 | human | 83450 | DRC3 | dynein regulatory complex s... | NM_031294.4 | 81.6% | 64% | 456C>T;571C>T;994_1279del |
| 3 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_024450966.1 | 81.6% | 64% | 456C>T;571C>T;994_1279del |
| 4 | human | 83450 | DRC3 | dynein regulatory complex s... | NM_001130091.2 | 80.9% | 73.1% | (many diffs) |
| 5 | human | 83450 | DRC3 | dynein regulatory complex s... | NM_001130092.2 | 80.9% | 73.1% | (many diffs) |
| 6 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_024450963.1 | 78.7% | 61.7% | (many diffs) |
| 7 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_024450964.1 | 78.7% | 61.7% | (many diffs) |
| 8 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_024450965.1 | 78.7% | 61.7% | (many diffs) |
| 9 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_011524021.2 | 78.6% | 61.4% | (many diffs) |
| 10 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_011524018.2 | 75.9% | 59.4% | (many diffs) |
| 11 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_011524019.2 | 75.9% | 59.4% | (many diffs) |
| 12 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_011524020.2 | 75.9% | 59.4% | (many diffs) |
| 13 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_024450961.1 | 75.9% | 59.4% | (many diffs) |
| 14 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_024450962.1 | 75.9% | 59.4% | (many diffs) |
| 15 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_011524022.2 | 74.8% | 67.2% | (many diffs) |
| 16 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_011524023.2 | 74.8% | 67.2% | (many diffs) |
| 17 | human | 83450 | DRC3 | dynein regulatory complex s... | XR_934109.2 | 59.5% | (many diffs) | |
| 18 | human | 83450 | DRC3 | dynein regulatory complex s... | XR_934110.2 | 55.5% | (many diffs) | |
| 19 | human | 83450 | DRC3 | dynein regulatory complex s... | XR_934111.2 | 55.3% | (many diffs) | |
| 20 | human | 83450 | DRC3 | dynein regulatory complex s... | XR_001752656.1 | 53.3% | (many diffs) | |
| 21 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_011524025.2 | 40% | 22.9% | 0_1ins654;340_625del |
| 22 | human | 83450 | DRC3 | dynein regulatory complex s... | XM_011524026.2 | 40% | 22.9% | 0_1ins654;340_625del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1167
- ORF length:
- 1101
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgaa ccagccgtgc aactcgatgg agccgagggt gatggacgat gacatgctca 121 agctggccgt cggggaccag ggcccccagg aggaggccgg gcagctggcc aagcaggagg 181 gcatcctctt caaggatgtc ctgtccctgc agctggactt tcggaacatc ctccgcatag 241 acaacctctg gcagtttgag aacttgagga agctgcagct ggacaataac atcattgaga 301 agatcgaggg cctggagaac ctcgcacacc tggtctggct ggatctgtct ttcaacaaca 361 ttgagaccat cgaggggctg gacacactgg tgaacctgga ggacctgagc ttgttcaaca 421 accggatctc caagatcgac tccctggacg ccctcgtcaa gctgcaggtg ttgtcgctgg 481 gcaacaaccg gattgacaac atgatgaaca tcatctacct tcggcggttc aagtgcctgc 541 ggacgctcag cctctctagg aaccctatct ctgaggcaga ggattacaag atgttcatct 601 gtgcctacct tcctgacctc atgtacctgg actactggcg cattgatgac cacacaaaaa 661 agcttgcgga ggctaagcac cagtacagca tcgacgagct gaagcaccag gagaacctga 721 tgcaggccca gctggaggac gagcaggcgc agcgggagga gctagagaag cacaagactg 781 cgtttgtgga acacctgaat ggctccttcc tgtttgacag catgtacgct gaggactcag 841 agggcaacaa tctgtcctac ctgcctggtg tcggtgagct ccttgagacc tacaaggaca 901 agtttgtcat catctgcgtg aatatttttg agtatggCCT GAAACAGCAG GAGAAGCGGA 961 AAACAGAGCT TGACACCTTC AGTGAATGTG TCCGTGAGGC CATCCAGGAA AACCAGGAGC 1021 AGGGCAAACG CAAGATTGCC AAATTCGAGG AGAAGCACTT GTCGAGGGCG ACCTGGACGA 1081 GGACCTGCCT AACGACCTGC GCGCGCTTTT TGTCGATAAA GATACGATTG TTAATGCTGT 1141 CGGGGCATCG CACGACATCC ACCTCCTGAA GATTGACAAT CGAGAAGATG AGCTGGTGAC 1201 CAGAATCAAC TCTTGGTGTA CACGTTTAAT AGACAGGATT CACAAGGATG AGATCATGAG 1261 GAACCGCAAG CGCGTGAAGG AGATCAATCA GTACATCGAC CACATGCAGA GCGAACTGGA 1321 CAACCTGGAA TGTGGCGACA TCCTAGACTA CCCAACTTTC TTGTACAAAG TGGTTGATAT 1381 CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC 1441 GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAACGGGG 1501 GTTCCTAGAT ATATGTCTAC GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt 1561 gaaagatt