Construct: ORF TRCN0000470230

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004049.1_s317c1
Derived from:
ccsbBroadEn_05405
DNA Barcode:
TACATATTTGGGTCAACAGTCTTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RNF180 (285671)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470230
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 285671 RNF180 ring finger protein 180 NM_178532.4 100% 100%
2 human 285671 RNF180 ring finger protein 180 XM_017009387.1 81.9% 81.4% (many diffs)
3 human 285671 RNF180 ring finger protein 180 NM_001323292.1 78.3% 76.4% (many diffs)
4 human 285671 RNF180 ring finger protein 180 XM_017009386.2 76.1% 75.7% (many diffs)
5 human 285671 RNF180 ring finger protein 180 NM_001113561.2 70.1% 68.5% (many diffs)
6 human 285671 RNF180 ring finger protein 180 XM_017009383.1 69.1% 68.7% (many diffs)
7 human 285671 RNF180 ring finger protein 180 XM_017009388.1 69.1% 68.7% (many diffs)
8 human 285671 RNF180 ring finger protein 180 XM_017009389.1 69.1% 68.7% (many diffs)
9 human 285671 RNF180 ring finger protein 180 XR_001742057.1 64.5% (many diffs)
10 human 285671 RNF180 ring finger protein 180 XR_001742056.2 63.1% (many diffs)
11 human 285671 RNF180 ring finger protein 180 XM_017009385.1 56.2% 54.8% (many diffs)
12 human 285671 RNF180 ring finger protein 180 XM_017009384.1 55.5% 55.1% (many diffs)
13 human 285671 RNF180 ring finger protein 180 NM_001323291.1 20.9% 19.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1317
ORF length:
1248
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gaaaagaagc aaagaattga taactaaaaa tcatagtcaa gaggaaacaa
121gtattcttcg ttgttggaaa tgtagaaaat gtatagcaag ctctggttgt tttatggagt
181atcttgagaa tcaagtgatt aaggataaag atgattcagt tgatgctcaa aatatttgtc
241atgtgtggca catgaatgta gaagcccttc cagaatggat aagctgccta atccaaaaag
301cccagtggac agttggaaaa ctgaattgtc ctttctgtgg ggcccgttta gggggcttta
361attttgtcag cactccaaaa tgttcctgtg gccagcttgc agctgtacat ctctccaaga
421gccggactga ttatcagcca acacaggcag gcagactaat gagaccatca gtgaaatact
481tgtcacatcc tagagttcag tcaggttgtg acaaggaagc tctgctgaca ggtggtggct
541ctgaaaacag aaatcacagg cttttaaaca tggcccgaaa taataatgac cctggaagat
601taacagaagc actctgcctg gaggtgcgac caacatattt tgagatgaag aacgaaaaac
661tgctgtccaa agcatcagaa ccaaaatacc agctttttgt tccccagctt gtgactggca
721gatgcgctac aagagctttt catagaaaat cacatagttt ggatctgaac atcagtgaga
781aactgacttt attacccact ttatatgaaa tacatagtaa gactactgcc tattccagac
841taaatgaaac acagcctatt gaccTTTCAG GCTTGCCTTT ACAATCTAGT AAAAATAGCT
901ATTCCTTTCA GAATCCATCC AGTTTTGATC CTAGTATGCT GCTGCAAAGA TTTTCAGTGG
961CCCCCCATGA GACCCAGACA CAAAGAGGAG GAGAATTTCA GTGTGGTCTA GAAGCTGCTT
1021CAGTGTATTC TGACCATACT AATACTAACA ATCTGACTTT CCTGATGGAC CTGCCCTCAG
1081CTGGCAGGAG CATGCCGGAG GCCTCAGACC AGGAAGAGCA CCTCTCCCCT CTGGACTTCC
1141TGCACTCAGC CAATTTTTCA TTGGGCAGCA TTAATCAGAG GCTTAATAAG AGAGAAAGGA
1201GCAAGTTGAA GAATCTAAGA AGGAAACAAC GAAGGCGTGA AAGATGGCTA CAGAAGCAGG
1261GTAAATACTC AGGAGTGGGA TTGCTGGATC ATATGGTAAG TATATATTTA CTTATATTGC
1321CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1381TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1441ATATATCTTG TGGAAAGGAC GATACATATT TGGGTCAACA GTCTTCACGC GTTAAGTCga
1501caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)