Construct: ORF TRCN0000470254

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008982.1_s317c1
Derived from:
ccsbBroadEn_11112
DNA Barcode:
CCCCTCTTGGAGGTTCAATCCCAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RTN1 (6252)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470254
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6252 RTN1 reticulon 1 NM_206852.2 95.6% 95.6% 1_27del
2 human 6252 RTN1 reticulon 1 NM_001363702.1 93.8% 94.9% (many diffs)
3 human 6252 RTN1 reticulon 1 NM_021136.3 24.8% 24.4% (many diffs)
4 mouse 104001 Rtn1 reticulon 1 NM_001007596.2 87.5% 94.2% (many diffs)
5 mouse 104001 Rtn1 reticulon 1 NM_001286448.1 67% 68.4% (many diffs)
6 mouse 104001 Rtn1 reticulon 1 NR_104446.1 36.9% (many diffs)
7 mouse 104001 Rtn1 reticulon 1 XM_006515323.1 25.2% 26.7% (many diffs)
8 mouse 104001 Rtn1 reticulon 1 XM_006515324.1 25.2% 26.7% (many diffs)
9 mouse 104001 Rtn1 reticulon 1 NM_153457.7 22.6% 23.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
663
ORF length:
597
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga ctgtgtgtgg agcaactgga aaagtcaggc tattgacctg ttgtattggc
121gggacatcaa gcagacgggc atcgtgtttg ggagtttcct gctgctgctc ttctccctga
181cccagttcag cgtggtgagc gtcgtggcct acctggccct ggccgcactc tcagccacca
241tcagtttccg catctacaag tctgttttac aagcagtgca gaaaaccgac gaaggccacc
301ctttcaaggc ctacttGGAG CTTGAGATCA CCCTTTCTCA GGAGCAGATT CAGAAGTACA
361CGGACTGCCT GCAGTTCTAC GTGAACAGCA CACTTAAGGA ACTGAGGAGG CTCTTCCTTG
421TCCAGGACCT GGTGGATTCC TTAAAATTTG CAGTCCTGAT GTGGCTCCTG ACCTACGTTG
481GCGCTCTCTT CAATGGCCTG ACCCTGCTGC TCATGGCTGT GGTTTCAATG TTTACTCTAC
541CTGTAGTGTA TGTTAAGCAC CAGGCACAGA TTGACCAATA TCTGGGACTT GTGAGGACTC
601ACATAAATGC TGTTGTGGCA AAGATTCAGG CTAAAATCCC AGGCGCTAAG AGGCACGCTG
661AGTACCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
721TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTCTTG
781GCTTTATATA TCTTGTGGAA AGGACGACCC CTCTTGGAGG TTCAATCCCA TACGCGTTAA
841GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)