Construct: ORF TRCN0000470811

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000077.1_s317c1
Derived from:
ccsbBroadEn_13716
DNA Barcode:
CCTGGTTGCCCCTCTAGGGCTTGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DPY19L2P1 (554236)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470811
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 283417 DPY19L2 dpy-19 like 2 XM_024448957.1 55.8% 47.5% (many diffs)
2 human 283417 DPY19L2 dpy-19 like 2 XM_024448955.1 52.7% 44.9% (many diffs)
3 human 283417 DPY19L2 dpy-19 like 2 XM_024448954.1 51.2% 43.5% (many diffs)
4 human 283417 DPY19L2 dpy-19 like 2 XM_024448953.1 43.9% 37.3% (many diffs)
5 human 283417 DPY19L2 dpy-19 like 2 XM_024448952.1 42.4% 36.1% (many diffs)
6 human 283417 DPY19L2 dpy-19 like 2 XM_024448951.1 42.3% 35.9% (many diffs)
7 human 283417 DPY19L2 dpy-19 like 2 XM_024448950.1 41% 34.9% (many diffs)
8 human 283417 DPY19L2 dpy-19 like 2 XM_024448949.1 40.2% 34.2% (many diffs)
9 human 283417 DPY19L2 dpy-19 like 2 XM_024448948.1 38.1% 32.4% (many diffs)
10 human 283417 DPY19L2 dpy-19 like 2 XM_017019192.2 32.2% 27.4% (many diffs)
11 human 283417 DPY19L2 dpy-19 like 2 XM_024448945.1 31.8% 27% (many diffs)
12 human 283417 DPY19L2 dpy-19 like 2 XM_024448944.1 30.8% 26.2% (many diffs)
13 human 283417 DPY19L2 dpy-19 like 2 NM_173812.5 30% 25.5% (many diffs)
14 human 554236 DPY19L2P1 DPY19L2 pseudogene 1 NR_002833.2 25.6% 1_121del;848_2827del
15 human 283417 DPY19L2 dpy-19 like 2 XR_002957316.1 18.4% (many diffs)
16 human 283417 DPY19L2 dpy-19 like 2 XM_024448956.1 18.2% 15% (many diffs)
17 human 283417 DPY19L2 dpy-19 like 2 XM_017019193.2 17.8% 14.4% (many diffs)
18 human 283417 DPY19L2 dpy-19 like 2 XR_002957315.1 17.7% (many diffs)
19 human 283417 DPY19L2 dpy-19 like 2 XR_002957314.1 16.5% (many diffs)
20 human 349152 DPY19L2P2 DPY19L2 pseudogene 2 NR_027768.1 16% (many diffs)
21 human 283417 DPY19L2 dpy-19 like 2 XM_006719352.2 13.3% 11% (many diffs)
22 human 283417 DPY19L2 dpy-19 like 2 XM_024448946.1 13.3% 11% (many diffs)
23 human 283417 DPY19L2 dpy-19 like 2 XM_024448947.1 13.3% 11% (many diffs)
24 human 283417 DPY19L2 dpy-19 like 2 XR_002957318.1 6.4% (many diffs)
25 human 283417 DPY19L2 dpy-19 like 2 XR_002957319.1 6.1% (many diffs)
26 human 283417 DPY19L2 dpy-19 like 2 XR_001748666.2 6% (many diffs)
27 human 283417 DPY19L2 dpy-19 like 2 XR_002957317.1 6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
792
ORF length:
726
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa gaaacaagga gtaaacccaa agccgctgca atcttcccgc cccagcccgt
121ctaagcggcc gtacggggcc tcccccgccc gggagctgga ggtggaaaag tcggccctag
181gcggcgggaa actgccaggg ggcgccagga ggtcctcccc ggggaggatc ccaaatctga
241aaaagcgaaa aggcttggag ctaaaggtgg tggccaagac ccttctcgac cccTTCCAGT
301TCGTCCGTAA TTCCCTGGCG CAGCTCCGGG AAGAGGTGCA CGAACTGCAG GCGCGGTGGT
361TCCCCAGCAG AACCACTCTC AGCATCGCCA TCTTTGTGGC AATTCTACAT TGGTTACATT
421TAGTAACACT TTTTGAAAAT GATCGTCATT TCTCTCACCT CTCATCTTTG GAATGGGAGA
481TGACTTTTCG CACTAAAATG GGACTTTATT ATTCCTACTT CAAGACCATC ATTGAAGCAC
541CTTCATTTTT GGAAGGACTG TGGATGATTA TGAATGACAG GCTTACTGAA TATCCTCTTG
601TAATTAATAC AGTAAAACGC TTCCATCTTT ATCCAGAGGT AATCATAGCT GCCTGGTATC
661GCACATTCAT AGGAATAATG AATTTATTTG GACTAGAAAC TAAGACCTGC TGGAATGTCA
721CCAGAATAGA ACCTCTTAAT GAGTTCAAAG CTGTGAAGGA TTGGGAGATC CTGCTTGCTT
781TTATGTTGGT GTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
841ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
901CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGACCT GGTTGCCCCT CTAGGGCTTG
961AACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)