Construct: ORF TRCN0000471169

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002547.1_s317c1
Derived from:
ccsbBroadEn_11648
DNA Barcode:
GTCCAGGACGTTTATTCGTGAGGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WDR47 (22911)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471169
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22911 WDR47 WD repeat domain 47 XM_011541028.3 96.8% 96.7% 157_240del;893C>A;1105A>T
2 human 22911 WDR47 WD repeat domain 47 XM_006710460.4 96.7% 96.6% (many diffs)
3 human 22911 WDR47 WD repeat domain 47 XM_011541030.1 96.7% 96.6% (many diffs)
4 human 22911 WDR47 WD repeat domain 47 NM_001142551.1 96.6% 96.5% (many diffs)
5 human 22911 WDR47 WD repeat domain 47 XM_017000697.2 96.6% 96.5% (many diffs)
6 human 22911 WDR47 WD repeat domain 47 NM_014969.5 96.5% 96.4% (many diffs)
7 human 22911 WDR47 WD repeat domain 47 XM_011541027.3 96.1% 96% (many diffs)
8 human 22911 WDR47 WD repeat domain 47 XM_011541029.2 96% 95.9% (many diffs)
9 human 22911 WDR47 WD repeat domain 47 XM_024454177.1 96% 95.9% (many diffs)
10 human 22911 WDR47 WD repeat domain 47 XM_017000696.2 95.9% 95.7% (many diffs)
11 human 22911 WDR47 WD repeat domain 47 NM_001142550.1 95.8% 95.6% (many diffs)
12 human 22911 WDR47 WD repeat domain 47 XM_011541031.1 91% 90.8% (many diffs)
13 mouse 99512 Wdr47 WD repeat domain 47 XM_011240310.1 87.2% 92.2% (many diffs)
14 mouse 99512 Wdr47 WD repeat domain 47 XM_006502417.3 87.2% 92.1% (many diffs)
15 mouse 99512 Wdr47 WD repeat domain 47 XM_011240311.2 87% 92% (many diffs)
16 mouse 99512 Wdr47 WD repeat domain 47 NM_181400.3 86.9% 91.9% (many diffs)
17 mouse 99512 Wdr47 WD repeat domain 47 XM_017319819.1 86.9% 91.9% (many diffs)
18 mouse 99512 Wdr47 WD repeat domain 47 XM_011240308.1 86.6% 91.5% (many diffs)
19 mouse 99512 Wdr47 WD repeat domain 47 XM_006502414.3 86.5% 91.4% (many diffs)
20 mouse 99512 Wdr47 WD repeat domain 47 XM_006502415.3 86.5% 91.4% (many diffs)
21 mouse 99512 Wdr47 WD repeat domain 47 XM_017319818.1 86.5% 91.4% (many diffs)
22 mouse 99512 Wdr47 WD repeat domain 47 XM_011240309.1 86.3% 91.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2745
ORF length:
2679
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac ggctgaagaa acagtgaatg taaaagaggt tgaaatcatt aagctaattt
121tggacttcct gaattcaaag aagcttcaca ttagtatgct ggccctggag aaggaaagtg
181gagtcataaa tggcctgttt tcagatgata tgcttttcct gaggtttcgt tatattatcc
241tgaagcagaa gtttttagaa gctttatgtg ttaacaacgc gatgtcagca gaagatgagc
301cccagcatct ggaatttacc atgcaagaag ctgtgcaatg tttacatgct ctagaagaat
361actgtccttc taaagatgac tatagtaagc tctgtttgct tttgactttg cctcgtctga
421ccaatcatgc cgagtttaag gactggaatc ccagcaccgc acgagttcac tgttttgaag
481aggcttgtgt catggttgca gaattcatcc ctgctgatag gaagctaagt gaagctggtt
541ttaaggctag taacaatcgt ttatttcagc ttgtaatgaa aggcctgctt tatgaatgct
601gtgtagaatt ttgtcagagt aaagcaactg gagaagaaat tacagaaagc gaagtgcttc
661ttggcatcga cctcttatgt ggtaatggtt gtgatgattt ggatctgagt ttactgtcat
721ggcttcagaa tcttccatct tctgtcttct cttgtgcttt tgaacagaaa atgcttaata
781ttcatgttga caaacttctg aaacctacaa aagctgcata tgctgatctt ttgactcctc
841ttatcagcaa actctctccc tatccatcat cccaaatgag aagacctcaa tcagctgatg
901cctatatgac ccgctctctg aatcctgctt tagatggcct cacctgtgga ctaaccagtc
961atgataagag aatttcagac cttggaaaca aaacttctcc aatgtcacac tcctttgcta
1021acttccatta tccaggggta caaaacctca gtagaagtct catgcttgag aatacagaat
1081gtcactgtat ttacgaagaa tcccctgagc gtgatacacc tgttgatgca cagaggccta
1141tcggcagtga aatcttgggc cagagttcag tttcagaaaa agagcctgca aatggagcac
1201agaatccagg accagctaaa caagaaaaaa atgagcttcg agattcaaca gaacaatttc
1261aagaatatta taggcaaaga ttacgctatc aacagcattt agaacagaag gagcaacagc
1321ggcagatata ccaacagatg ttgcttgaag gaggcgtgaa tcaggaggat ggtcctgatc
1381agcagcagaa tcttactgaa cagttcctta ataggtccat tcaaaagctt ggtgaattaa
1441atattggaat ggatggcctt ggtaatgagg tatcagcact caaccagcaa tgtaatggga
1501gcaaaggcaa tggatctaat ggttcttctg tgactagttt tactacacca ccccaagact
1561ctagtcagag attaacacat gatgcttcaa atattcatac aagcactcct cgtaatcctg
1621gatcaacaaa tcacatacct tttctggagg aatcaccttg tggaagccaa atctcttcag
1681aacattcggt cattaagcca cctcttggag attctccagg gagtctttca aggtcgaaag
1741gggaagagga tgacaaatca aaaaagcagt ttgtttgtat taatatccta gaagacacac
1801aagctgttag agcagtggct tttcatccag ctggaggttt atatgctgtt ggttcaaatt
1861caaaaactct gagagtatgt gcctatccag atgtaattga tccaagtgca catgagactc
1921ctaagcagcc ggtggtacgt tttaaaagga ataaacatca taaaggatcc atttactgtg
1981tggcctggag tccttgtggg cagttattag caacaggatc aaatgacaaa tacgtcaaag
2041tgctgccctt caatgcagag acttgtaacg caacagtttc aggaccagat ctggaattta
2101gtatgcatga tggaacaatt agagacttgg catttatgga aggcccagaa agcggaggag
2161ctattttaat aagtgctgga gcaggggatt gtaacattta tacaaccgat tgtcaaagag
2221gacagggcct ccatgctttg agtggacata ctgggcatat tttagcactt tatacctGGA
2281GTGGCTGGAT GATTGCATCT GGTTCCCAAG ATAAGACTGT TAGATTTTGG GATCTTCGAG
2341TACCAAGTTG TGTTCGTGTT GTTGGCACAA CATTTCATGG AACTGGCAGT GCAGTGGCAT
2401CTGTAGCTGT AGATCCCAGT GGTCGTCTCT TAGCCACAGG TCAAGAAGAT TCTAGCTGCA
2461TGTTGTATGA CATAAGAGGA GGAAGAATGG TACAAAGTTA TCATCCTCAT TCCAGTGATG
2521TTCGCTCTGT TCGATTCTCC CCTGGAGCTC ACTACTTGCT AACAGGCTCT TATGATATGA
2581AAATAAAGGT GACAGACCTA CAAGGGGACC TCACCAAGCA GCTTCCTATC ATGGTGGTGG
2641GGGAGCACAA GGACAAAGTG ATTCAGTGCA GATGGCACAC CCAGGATCTT TCCTTCCTGT
2701CATCCTCTGC AGATAGAACT GTCACCCTCT GGACTTACAA TGGGTACCCA ACTTTCTTGT
2761ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
2821AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTTGG
2881AAAGGACGAG TCCAGGACGT TTATTCGTGA GGTACGCGTT AAGTCgacaa tcaacctctg
2941gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)