Construct: ORF TRCN0000471325

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016267.1_s317c1
Derived from:
ccsbBroadEn_11594
DNA Barcode:
CGGTCTCGAGCTGCCTTCAGGCTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HNRNPUL1 (11100)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471325
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_011526392.3 98.4% 98.5% 2091A>G;2259_2260ins36
2 human 11100 HNRNPUL1 heterogeneous nuclear ribon... NM_007040.6 93.8% 93.9% 2091A>G;2258_2413del
3 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_005258459.4 92.8% 92.8% 2091A>G;2258_2443del
4 human 11100 HNRNPUL1 heterogeneous nuclear ribon... NM_001301016.3 82.8% 82.5% (many diffs)
5 human 11100 HNRNPUL1 heterogeneous nuclear ribon... NM_001321208.2 82.2% 82.2% 0_1ins300;1791A>G;1958_2113del
6 human 11100 HNRNPUL1 heterogeneous nuclear ribon... NM_001321211.2 82.2% 82.2% 0_1ins300;1791A>G;1958_2113del
7 human 11100 HNRNPUL1 heterogeneous nuclear ribon... NM_144732.5 82.2% 82.2% 0_1ins300;1791A>G;1958_2113del
8 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_005258461.5 81.9% 81.6% (many diffs)
9 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_005258463.4 81.2% 81.2% 0_1ins300;1791A>G;1958_2143del
10 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_005258464.4 81.2% 81.2% 0_1ins300;1791A>G;1958_2143del
11 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_005258465.5 81.2% 81.2% 0_1ins300;1791A>G;1958_2143del
12 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_011526393.3 81.2% 81.2% 0_1ins300;1791A>G;1958_2143del
13 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_011526394.3 81.2% 81.2% 0_1ins300;1791A>G;1958_2143del
14 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_011526395.3 81.2% 81.2% 0_1ins300;1791A>G;1958_2143del
15 mouse 232989 Hnrnpul1 heterogeneous nuclear ribon... NM_144922.2 84.6% 89.3% (many diffs)
16 mouse 232989 Hnrnpul1 heterogeneous nuclear ribon... XM_006539855.3 73.7% 78.6% (many diffs)
17 mouse 232989 Hnrnpul1 heterogeneous nuclear ribon... XM_006539856.2 73.7% 78.6% (many diffs)
18 mouse 232989 Hnrnpul1 heterogeneous nuclear ribon... NM_178089.2 38% 38.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2478
ORF length:
2412
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga tgtgcgccgt ctgaaggtga acgaacttcg cgaggagctg cagcgccgcg
121gcctggacac tcgaggcctc aaggccgagc ttgctgagcg gctgcaggcg gcgttggagg
181ccgaggagcc tgacgacgag cgggagctcg acgccgacga cgaaccgggg cgacccgggc
241acatcaacga ggaggtcgag accgaggggg gctccgagct ggaggggacc gcgcagccac
301cgccgcccgg gctgcagccg cacgcggagc ccggcggcta ctcggggccg gacggacatt
361atgccatgga caatattacc aggcagaacc aattctacga tacccaagtc atcaaacaag
421aaaacgagtc aggctacgag aggagaccac tggaaatgga gcagcagcag gcctatcgtc
481cagaaatgaa gacagagatg aagcaaggag cacccaccag cttcctcccg cctgaagctt
541ctcaactcaa gccagacagg cagcaattcc agagtcgaaa gaggccttat gaagaaaacc
601ggggacgggg gtactttgag caccgagagg ataggagggg ccgctctcct cagcctcctg
661ctgaagagga tgaagatgac tttgatgata cccttgttgc tattgacacc tataactgcg
721acctccactt caaggtggcc cgagatcgga gtagtggcta tccgctcaca attgagggct
781ttgcatacct gtggtcagga gcccgtgcca gctatggggt cagaaggggc cgtgtatgct
841tcgagatgaa gatcaatgag gaaatctccg tgaagcacct tccgtctaca gagcctgacc
901cccacgtggt ccgtatcggc tggtccctgg actcctgcag cacccagcta ggcgaagagc
961ctttctccta tggctatgga ggcactggga agaagtccac caatagccgg tttgaaaact
1021acggagacaa gtttgcagag aacgatgtga ttggctgctt tgcggatttt gaatgtggaa
1081atgacgtgga actgtctttt accaagaatg gaaagtggat gggcattgct ttccgaatcc
1141agaaggaagc cttggggggt caggccctct atcctcatgt cctggtgaag aattgcgcag
1201tggagttcaa cttcggacag agagcagagc cctactgttc tgtcctcccg gggtttacct
1261tcatccagca ccttcccctt agtgagcgta tccggggcac cgttggacca aagagcaagg
1321cagaatgtga gattctgatg atggtgggcc tgcctgctgc tggcaagacc acatgggcca
1381tcaaacatgc agcctccaac ccttccaaga agtacaacat cctgggtacc aatgccatca
1441tggataagat gcgggtgatg ggcctacgcc ggcagcggaa ctatgctggc cgctgggatg
1501tcctgatcca gcaggccacc cagtgcctca accgcctcat ccagattgct gcccgcaaga
1561aacgcaacta tatcctagat cagacaaatg tttatgggtc agcccagaga cgaaaaatga
1621gaccatttga aggcttccag cgcaaagcta ttgtaatttg tcccactgac gaggacctaa
1681aagaccgaac aataaagcga accgacgagg aagggaagga tgtcccagat catgcggtct
1741tagaaatgaa agccaacttc acgttgccag atgttgggga cttcctggat gaggttctgt
1801tcattgagct gcagcgggag gaagcggaca agctagtgag gcagtacaac gaggaaggcc
1861gcaaggctgg gccaccccct gaaaagcgct ttgacaaccg aggtggtggt ggcttccggg
1921gccgcggggg tggtggtggc ttccagcgct atgaaaaccg aggaccccct ggaggcaacc
1981gtggcggctt ccagaaccga gggggaggca gcggtggagg aggcaactac cgaggaggtt
2041tcaaccgcag cggaggtggt ggctatagcc agaaccgctg gggtaacaac aaccgggata
2101acaacaactc caacaacaga ggcagctaca accgggctcc ccagcaacag ccgccgccac
2161agcagcctcc gccaccacag ccaccacccc agcagccacc gccaccaccc agctacagcc
2221ctgctcggaa ccccccaggg gccagcaccT ACAATAAGAA CAGCAACATC CCTGGCTCAA
2281GCGCCAATAC CAGCACCCCC ACCGTCAGCA GCTACAGCCC TCCACAGACC TACCCTCAGC
2341CCAGCTATAA CCAGTATCAG CAGTATGCCC AGCAGTGGAA CCAGTACTAT CAGAACCAGG
2401GCCAGTGGCC GCCATACTAC GGGAACTACG ACTACGGGAG CTACTCCGGG AACACACAGG
2461GTGGCACAAG TACACAGTAC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
2521TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
2581GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGACGGTCTC GAGCTGCCTT
2641CAGGCTCACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)