Construct: ORF TRCN0000471457
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014237.1_s317c1
- Derived from:
- ccsbBroadEn_01722
- DNA Barcode:
- GGCTCTGTTACACGCCGCCTATAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DNAJC7 (7266)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471457
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | NM_001144766.2 | 100% | 100% | |
| 2 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XM_011525167.3 | 100% | 100% | |
| 3 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XM_011525168.3 | 100% | 100% | |
| 4 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XM_011525169.3 | 100% | 100% | |
| 5 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XM_017024994.2 | 100% | 100% | |
| 6 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | NM_003315.4 | 88.6% | 88.6% | 1_168del |
| 7 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XR_001752602.2 | 69.7% | 1_195del;1037_1136del;1610_1885del | |
| 8 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | NR_029431.1 | 65.4% | 1_360del;1675_2007del | |
| 9 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XR_001752603.2 | 58.9% | (many diffs) | |
| 10 | mouse | 56354 | Dnajc7 | DnaJ heat shock protein fam... | XM_011249154.2 | 84.3% | 89.7% | (many diffs) |
| 11 | mouse | 56354 | Dnajc7 | DnaJ heat shock protein fam... | NM_019795.4 | 81.5% | 86.8% | (many diffs) |
| 12 | mouse | 56354 | Dnajc7 | DnaJ heat shock protein fam... | XR_001780034.1 | 63.1% | (many diffs) | |
| 13 | mouse | 56354 | Dnajc7 | DnaJ heat shock protein fam... | XR_001780033.1 | 54.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1380
- ORF length:
- 1314
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtg tcctaaaaat gctagctatt atggtaatcg agcagccacc ttgatgatgc 121 ttggaaggtt ccgggaagct cttggagatg cacaacagtc agtgaggttg gatgacagtt 181 ttgtccgggg acatctacga gagggcaagt gccacctctc tctggggaat gccatggcag 241 catgtcgcag cttccagaga gccctagaac tggatcataa aaatgctcag gcacaacaag 301 agttcaagaa tgctaatgca gtcatggaat atgagaaaat agcagaaaca gattttgaga 361 agcgagattt tcggaaggtt gttttctgca tggaccgtgc cctagaattt gcccctgcct 421 gccatcgctt caaaatcctc aaggcagaat gtttagcaat gctgggtcgt tatccagaag 481 cacagtctgt ggctagtgac attctacgaa tggattccac caatgcagat gctctgtatg 541 tacgaggtct ttgcctttat tacgaagatt gtattgagaa ggcagttcag tttttcgtac 601 aggctctcag gatggctcct gaccacgaga aggcctgcat tgcctgcaga aatgccaaag 661 cactcaaagc aaagaaagaa gatgggaata aagcatttaa ggaaggaaat tacaaactag 721 catatgaact gtacacagaa gccctgggga tagaccccaa caatataaaa acaaatgcta 781 aactctactg taatcggggt acggttaatt ccaagcttag gaaactagat gatgcaatag 841 aagactgcac aaatgcagtg aagcttgatg acacttacat aaaagcctac ttgagaagag 901 ctcagtgtta catggacaca gaacagtatg aagaagcagt acgagactat gaaaaagtat 961 aCCAGACAGA GAAAACAAAA GAACACAAAC AGCTCCTAAA AAATGCGCAG CTGGAACTGA 1021 AGAAGAGTAA GAGGAAAGAT TACTACAAGA TTCTAGGAGT GGACAAGAAT GCCTCTGAGG 1081 ACGAGATCAA GAAAGCTTAT CGGAAACGGG CCTTGATGCA CCATCCAGAT CGGCATAGTG 1141 GAGCCAGTGC TGAGGTTCAG AAGGAGGAGG AGAAGAAGTT CAAGGAAGTT GGAGAGGCCT 1201 TTACTATCCT CTCTGATCCC AAGAAAAAGA CTCGCTATGA CAGTGGACAG GACCTAGATG 1261 AGGAGGGCAT GAATATGGGT GATTTTGATC CAAACAATAT CTTCAAGGCA TTCTTTGGCG 1321 GTCCTGGCGG CTTCAGCTTT GAAGCATCTG GTCCAGGGAA TTTCTTTTTT CAATTTGGCT 1381 ACCTAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG 1441 GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC 1501 TTTATATATC TTGTGGAAAG GACGAGGCTC TGTTACACGC CGCCTATATA CGCGTTAAGT 1561 Cgacaatcaa cctctggatt acaaaatttg tgaaagatt