Construct: ORF TRCN0000471468
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002203.1_s317c1
- Derived from:
- ccsbBroadEn_03218
- DNA Barcode:
- TGCCTACAGACGGAAAGGTACGAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RPL26L1 (51121)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471468
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51121 | RPL26L1 | ribosomal protein L26 like 1 | NM_001317980.1 | 100% | 100% | |
| 2 | human | 51121 | RPL26L1 | ribosomal protein L26 like 1 | NM_001317981.1 | 100% | 100% | |
| 3 | human | 51121 | RPL26L1 | ribosomal protein L26 like 1 | NM_001317982.1 | 100% | 100% | |
| 4 | human | 51121 | RPL26L1 | ribosomal protein L26 like 1 | NM_016093.3 | 100% | 100% | |
| 5 | human | 51121 | RPL26L1 | ribosomal protein L26 like 1 | XM_011534565.2 | 100% | 100% | |
| 6 | human | 51121 | RPL26L1 | ribosomal protein L26 like 1 | XM_017009519.2 | 100% | 100% | |
| 7 | human | 51121 | RPL26L1 | ribosomal protein L26 like 1 | XM_017009520.1 | 100% | 100% | |
| 8 | human | 6154 | RPL26 | ribosomal protein L26 | NM_000987.5 | 84.1% | 98.6% | (many diffs) |
| 9 | human | 6154 | RPL26 | ribosomal protein L26 | NM_001315530.2 | 84.1% | 98.6% | (many diffs) |
| 10 | human | 6154 | RPL26 | ribosomal protein L26 | NM_001315531.2 | 84.1% | 98.6% | (many diffs) |
| 11 | mouse | 19941 | Rpl26 | ribosomal protein L26 | NM_009080.2 | 83.6% | 98.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 525
- ORF length:
- 435
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGAAGTTCAA TCCCTTCGTT ACCTCGGACC 121 GCAGTAAAAA CCGCAAACGT CACTTCAATG CCCCCTCACA CGTGCGCAGG AAGATCATGT 181 CATCCCCGCT CTCCAAGGAG CTGCGGCAGA AGTACAATGT CCGCTCCATG CCCATCCGCA 241 AGGACGACGA GGTCCAGGTA GTTCGAGGAC ACTACAAAGG TCAGCAAATT GGCAAGGTAG 301 TCCAGGTGTA CAGAAAGAAA TATGTCATCT ACATCGAGCG GGTGCAGCGT GAGAAGGCCA 361 ACGGCACAAC TGTCCACGTG GGCATTCACC CAAGCAAGGT GGTTATCACC AGGCTAAAAC 421 TGGACAAGGA TCGGAAAAAA ATTCTTGAAC GCAAAGCCAA GTCTCGACAA GTTGGAAAAG 481 AGAAAGGCAA ATATAAAGAA GAACTTATTG AGAAAATGCA GGAATACCCA ACTTTCTTGT 541 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 601 AGTAATGAAC TAGTCCTTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 661 GAAAGGACGA TGCCTACAGA CGGAAAGGTA CGATACGCGT TAAGTCgaca atcaacctct 721 ggattacaaa atttgtgaaa gatt