Construct: ORF TRCN0000471716

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012514.1_s317c1
Derived from:
ccsbBroadEn_07187
DNA Barcode:
TTGTCGAATTCGCCTCTGGCGCAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471716
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7919 DDX39B DExD-box helicase 39B NM_004640.7 99.9% 99.7% 886T>C
2 human 7919 DDX39B DExD-box helicase 39B NM_080598.6 99.9% 99.7% 886T>C
3 human 10212 DDX39A DExD-box helicase 39A NM_005804.4 78.5% 89.7% (many diffs)
4 human 10212 DDX39A DExD-box helicase 39A XM_011527620.1 78.5% 89.7% (many diffs)
5 human 7919 DDX39B DExD-box helicase 39B NR_037852.2 63.1% (many diffs)
6 human 100532737 ATP6V1G2-DDX39B ATP6V1G2-DDX39B readthrough... NR_037853.1 55.6% 1_803del;1689T>C;2088_2305del
7 human 10212 DDX39A DExD-box helicase 39A XM_006722606.4 42% 48.3% (many diffs)
8 human 10212 DDX39A DExD-box helicase 39A XM_011527621.3 42% 48.3% (many diffs)
9 human 10212 DDX39A DExD-box helicase 39A XM_024451311.1 42% 48.3% (many diffs)
10 human 10212 DDX39A DExD-box helicase 39A XM_024451312.1 42% 48.3% (many diffs)
11 mouse 53817 Ddx39b DEAD (Asp-Glu-Ala-Asp) box ... NM_001252457.1 92% 99.2% (many diffs)
12 mouse 53817 Ddx39b DEAD (Asp-Glu-Ala-Asp) box ... NM_019693.3 92% 99.2% (many diffs)
13 mouse 68278 Ddx39 DEAD (Asp-Glu-Ala-Asp) box ... NM_197982.3 80% 90.4% (many diffs)
14 mouse 68278 Ddx39 DEAD (Asp-Glu-Ala-Asp) box ... XM_006531332.3 80% 90.4% (many diffs)
15 mouse 68278 Ddx39 DEAD (Asp-Glu-Ala-Asp) box ... XM_017312949.1 74.8% 84.3% (many diffs)
16 mouse 68278 Ddx39 DEAD (Asp-Glu-Ala-Asp) box ... XM_017312950.1 74.8% 84.3% (many diffs)
17 mouse 68278 Ddx39 DEAD (Asp-Glu-Ala-Asp) box ... XM_017312952.1 43.4% 48.5% (many diffs)
18 mouse 68278 Ddx39 DEAD (Asp-Glu-Ala-Asp) box ... XM_017312951.1 40.5% 45.3% (many diffs)
19 mouse 102465886 Mir8094 microRNA 8094 NR_106169.1 7.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1350
ORF length:
1284
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc agagaacgat gtggacaatg agctcttgga ctatgaagat gatgaggtgg
121agacagcagc tgggggagat ggggctgagg cccctgccaa gaaggatgtc aagggctcct
181atgtctccat ccacagctct ggctttcgtg acttcctgct caagccagag ttgctccggg
241ccattgtcga ctgtggcttt gagcatccgt cagaagtcca gcatgagtgc atccctcagg
301ccattctggg aatggatgtc ctgtgccagg ccaagtcggg catgggaaag acagcagtgt
361ttgtcttggc cacactgcaa cagctggagc cagttactgg gcaggtgtct gtactggtga
421tgtgtcacac tcgggagttg gcttttcaga tcagcaagga atatgagcgc ttctctaaat
481acatgcccaa tgtcaaggtt gctgtttttt ttggtggtct gtctatcaag aaggatgaag
541aggtgctgaa gaagaactgc ccgcatatcg tcgtggggac tccaggccgt atcctagccc
601tggctcgaaa taagagcctc aacctcaaac acattaaaca ctttattttg gatgaatgtg
661ataagatgct tgaacagctc gacatgcgtc gggatgtcca ggaaattttt cgcatgaccc
721cccacgagaa gcaggtcatg atgttcagtg ctaccttgag caaagagatc cgtccagtct
781gccgcaagtt catgcaagat ccaatggaga tcttcgtgga tgatgagacg aagttgacgc
841tgcatgggtt gcagcagtac tacgtgaaac tgaaggacaa cgagaagaac cggaagctct
901ttgaccttct ggatgtcctt gagttcaacc aggtggtgat ctttgtgaag ccTGTGCAGC
961GGTGCATTGC CTTGGCCCAG CTACTAGTGG AGCAGAACTT CCCAGCCATT GCCATCCACC
1021GTGGGATGCC CCAGGAGGAG AGGCTTTCTC GGTATCAGCA GTTTAAAGAT TTTCAACGAC
1081GAATTCTTGT GGCTACCAAC CTATTTGGCC GAGGCATGGA CATCGAGCGG GTGAACATTG
1141CTTTTAATTA TGACATGCCT GAGGATTCTG ACACCTACCT GCATCGGGTG GCCAGAGCAG
1201GCCGGTTTGG CACCAAGGGC TTGGCTATCA CATTTGTGTC CGATGAGAAT GATGCCAAGA
1261TCCTCAATGA TGTGCAGGAT CGCTTTGAGG TCAATATTAG TGAGCTGCCT GATGAGATAG
1321ACATCTCCTC CTACATTGAA CAGACACGGT ACCCAACTTT CTTGTACAAA GTGGTTGATA
1381TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
1441CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATTGTC
1501GAATTCGCCT CTGGCGCAGA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1561tgaaagatt

Download FASTA (ORF) (Full)