Transcript: Human NR_037853.1

Homo sapiens ATP6V1G2-DDX39B readthrough (NMD candidate) (ATP6V1G2-DDX39B), long non-coding RNA.

Source:
NCBI, updated 2018-05-12
Taxon:
Homo sapiens (human)
Gene:
ATP6V1G2-DDX39B (100532737)
Length:
2305
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_037853.1
NBCI Gene record:
ATP6V1G2-DDX39B (100532737)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_037853.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000307312 CCTAGCCCTGGCTCGAAATAA pLKO_005 1331 3UTR 100% 15.000 7.500 Y DDX39B n/a
2 TRCN0000074383 CCTCAACCTCAAACACATTAA pLKO.1 1355 3UTR 100% 13.200 6.600 Y DDX39B n/a
3 TRCN0000286976 CCTCAACCTCAAACACATTAA pLKO_005 1355 3UTR 100% 13.200 6.600 Y DDX39B n/a
4 TRCN0000294330 GGATCGCTTTGAGGTCAATAT pLKO_005 2015 3UTR 100% 13.200 6.600 Y DDX39B n/a
5 TRCN0000074385 GAAGAAGAACTGCCCGCATAT pLKO.1 1286 3UTR 100% 10.800 5.400 Y DDX39B n/a
6 TRCN0000074386 GATAGACATCTCCTCCTACAT pLKO.1 2054 3UTR 100% 4.950 2.475 Y DDX39B n/a
7 TRCN0000074387 TGCCGCAAGTTCATGCAAGAT pLKO.1 1518 3UTR 100% 4.950 2.475 Y DDX39B n/a
8 TRCN0000287043 TGCCGCAAGTTCATGCAAGAT pLKO_005 1518 3UTR 100% 4.950 2.475 Y DDX39B n/a
9 TRCN0000443638 GCAGATGCCAGAAAGAGGAAG pLKO_005 356 3UTR 100% 4.050 2.025 Y ATP6V1G2 n/a
10 TRCN0000294383 TTTGGAATGTGACCGTCTGTC pLKO_005 2104 3UTR 100% 4.050 2.025 Y DDX39B n/a
11 TRCN0000074384 GCTATCACATTTGTGTCCGAT pLKO.1 1962 3UTR 100% 2.640 1.320 Y DDX39B n/a
12 TRCN0000038384 GCACAGATGGAGGTGGAGCAA pLKO.1 407 3UTR 100% 0.880 0.440 Y ATP6V1G2 n/a
13 TRCN0000038388 AGAGCACGAATTCCAGAGCAA pLKO.1 442 3UTR 100% 0.000 0.000 Y ATP6V1G2 n/a
14 TRCN0000038385 CCGGCGACTGAAGCAGGCAAA pLKO.1 379 3UTR 100% 0.000 0.000 Y ATP6V1G2 n/a
15 TRCN0000104083 CGCAAGTTCATGCAAGATCCT pLKO.1 1521 3UTR 100% 2.640 1.320 Y Ddx39b n/a
16 TRCN0000335759 CGCAAGTTCATGCAAGATCCT pLKO_005 1521 3UTR 100% 2.640 1.320 Y Ddx39b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_037853.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07187 pDONR223 100% 55.6% None 1_803del;1689T>C;2088_2305del n/a
2 ccsbBroad304_07187 pLX_304 0% 55.6% V5 1_803del;1689T>C;2088_2305del n/a
3 TRCN0000471716 TTGTCGAATTCGCCTCTGGCGCAG pLX_317 31.2% 55.6% V5 1_803del;1689T>C;2088_2305del n/a
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