Construct: ORF TRCN0000471841
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013720.1_s317c1
- Derived from:
- ccsbBroadEn_10689
- DNA Barcode:
- AACTATAAGACCCGGATATGCACT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATM (472)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471841
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 472 | ATM | ATM serine/threonine kinase | XM_006718845.2 | 7.6% | 7.6% | 394_5124del |
| 2 | human | 472 | ATM | ATM serine/threonine kinase | XM_017017792.2 | 7.3% | 7.3% | 1_4044del;4438_5325del |
| 3 | human | 472 | ATM | ATM serine/threonine kinase | XM_017017791.1 | 6% | 6% | 1_4044del;4438_6474del |
| 4 | human | 472 | ATM | ATM serine/threonine kinase | XR_002957150.1 | 5.9% | 1_4777del;5171_6577del | |
| 5 | human | 472 | ATM | ATM serine/threonine kinase | XM_011542845.2 | 5% | 5% | 1_2736del;3130_7860del |
| 6 | human | 472 | ATM | ATM serine/threonine kinase | XM_011542844.3 | 4.8% | 4.8% | 1_3000del;3394_8124del |
| 7 | human | 472 | ATM | ATM serine/threonine kinase | XM_011542843.2 | 4.4% | 4.4% | 1_4044del;4438_8736del |
| 8 | human | 472 | ATM | ATM serine/threonine kinase | XM_011542842.3 | 4.3% | 4.3% | 1_3879del;4273_9003del |
| 9 | human | 472 | ATM | ATM serine/threonine kinase | NM_000051.3 | 4.2% | 4.2% | 1_4044del;4438_9168del |
| 10 | human | 472 | ATM | ATM serine/threonine kinase | NM_001351834.2 | 4.2% | 4.2% | 1_4044del;4438_9168del |
| 11 | human | 472 | ATM | ATM serine/threonine kinase | XM_005271562.5 | 4.2% | 4.2% | 1_4044del;4438_9168del |
| 12 | human | 472 | ATM | ATM serine/threonine kinase | XM_006718843.4 | 4.2% | 4.2% | 1_4044del;4438_9168del |
| 13 | human | 472 | ATM | ATM serine/threonine kinase | XM_011542840.3 | 4.2% | 4.2% | 1_4044del;4438_9168del |
| 14 | human | 472 | ATM | ATM serine/threonine kinase | XM_017017789.2 | 4.2% | 4.2% | 1_4044del;4438_9168del |
| 15 | human | 472 | ATM | ATM serine/threonine kinase | XM_017017790.2 | 4.2% | 4.2% | 1_4044del;4438_9168del |
| 16 | mouse | 11920 | Atm | ataxia telangiectasia mutated | XM_011242386.1 | 5.1% | 5.5% | (many diffs) |
| 17 | mouse | 11920 | Atm | ataxia telangiectasia mutated | XM_006509956.3 | 3.6% | 3.9% | (many diffs) |
| 18 | mouse | 11920 | Atm | ataxia telangiectasia mutated | NM_007499.2 | 3.6% | 3.9% | (many diffs) |
| 19 | mouse | 11920 | Atm | ataxia telangiectasia mutated | XM_011242385.2 | 3.6% | 3.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 483
- ORF length:
- 393
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGACGTTACA TGAGCCAGCA AATTCTAGTG 121 CCAGTCAGAG CACTGACCTC TGTGACTTTT CAGGGGATTT GGATCCTGCT CCTAATCCAC 181 CTCATTTTCC ATCGCATGTG ATTAAAGCAA CATTTGCCTA TATCAGCAAT TGTCATAAAA 241 CCAAGTTAAA AAGCATTTTA GAAATTCTTT CCAAAAGCCC TGATTCCTAT CAGAAAATTC 301 TTCTTGCCAT ATGTGAGCAA GCAGCTGAAA CAAATAATGT TTATAAGAAG CACAGAATTC 361 TTAAAATATA TCACCTGTTT GTTAGTTTAT TACTGAAAGA TATAAAAAGT GGCTTAGGAG 421 GAGCTTGGGC CTTTGTTCTT CGAGACGTTA TTTATACTTT GATTCACTAT ATCAACCAAA 481 GGTACCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC 541 TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT 601 GGCTTTATAT ATCTTGTGGA AAGGACGAAA CTATAAGACC CGGATATGCA CTACGCGTTA 661 AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt