Construct: ORF TRCN0000472048
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014805.1_s317c1
- Derived from:
- ccsbBroadEn_11630
- DNA Barcode:
- CAAATAGGCCTTTCAACCGACTGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NLGN4Y (22829)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472048
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_001164238.1 | 52.3% | 52.3% | 1_366del |
| 2 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_017030041.1 | 52.3% | 52.3% | 1_366del |
| 3 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_001365584.1 | 14.7% | 13.1% | (many diffs) |
| 4 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_001365586.1 | 14.7% | 13.1% | (many diffs) |
| 5 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_001365588.1 | 14.7% | 13.1% | (many diffs) |
| 6 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_006724874.2 | 14.7% | 13.1% | (many diffs) |
| 7 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_011531427.2 | 14.7% | 13.1% | (many diffs) |
| 8 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_011531428.1 | 14.7% | 13.1% | (many diffs) |
| 9 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_011531429.2 | 14.7% | 13.1% | (many diffs) |
| 10 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_011531430.2 | 14.7% | 13.1% | (many diffs) |
| 11 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_024452490.1 | 14.7% | 13.1% | (many diffs) |
| 12 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_005274564.3 | 13.9% | 12.1% | (many diffs) |
| 13 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_005274565.2 | 13.9% | 12.1% | (many diffs) |
| 14 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_005274566.4 | 13.9% | 12.1% | (many diffs) |
| 15 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_006724504.3 | 13.9% | 12.1% | (many diffs) |
| 16 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_011545547.2 | 13.9% | 12.1% | (many diffs) |
| 17 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_011545548.2 | 13.9% | 12.1% | (many diffs) |
| 18 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_017030039.1 | 13.2% | 10.7% | (many diffs) |
| 19 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_001365590.1 | 12.3% | 10.8% | (many diffs) |
| 20 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_001365591.1 | 12.3% | 10.8% | (many diffs) |
| 21 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_001365592.1 | 12.3% | 10.8% | (many diffs) |
| 22 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_001365593.1 | 12.3% | 10.8% | (many diffs) |
| 23 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NM_014893.4 | 12.3% | 10.8% | (many diffs) |
| 24 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | XM_017030036.1 | 12.3% | 10.8% | (many diffs) |
| 25 | human | 57502 | NLGN4X | neuroligin 4 X-linked | NM_001282145.2 | 11.8% | 10.3% | (many diffs) |
| 26 | human | 57502 | NLGN4X | neuroligin 4 X-linked | NM_001282146.1 | 11.8% | 10.3% | (many diffs) |
| 27 | human | 57502 | NLGN4X | neuroligin 4 X-linked | NM_020742.3 | 11.8% | 10.3% | (many diffs) |
| 28 | human | 57502 | NLGN4X | neuroligin 4 X-linked | NM_181332.3 | 11.8% | 10.3% | (many diffs) |
| 29 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_017029691.1 | 11.8% | 10.3% | (many diffs) |
| 30 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_017029692.1 | 11.8% | 10.3% | (many diffs) |
| 31 | human | 57502 | NLGN4X | neuroligin 4 X-linked | XM_017029693.1 | 11.8% | 10.3% | (many diffs) |
| 32 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NR_046355.1 | 6.8% | (many diffs) | |
| 33 | human | 22829 | NLGN4Y | neuroligin 4 Y-linked | NR_028319.1 | 5.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 492
- ORF length:
- 402
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGCTGCCCAT CTGGTTTACC ACCAGTTTGG 121 ATACTTTGAT GACCTATGTT CAAGATCAAA ATGAAGACTG CCTTTACTTA AACATCTATG 181 TGCCCATGGA AGATGGAACC AACATAAAGA GAAATGCAGA CGATATAACC AGTAATGACC 241 ATGGTGAAGA TAAAGATATT CATGAACAGA ACAGTAAGAA GCCTGTTATG GTCTATATCC 301 ATGGGGGATC TTACATGGAG GGAACCGGTA ACATGATTGA TGGCAGCATT TTGGCCAGCT 361 ATGGGAACGT CATCGTTATC ACCATTAACT ACCGTCTGGG AATACTAGGT ATGCAAGAGG 421 CACGTTTGTG TGGGAGCTCA AAAATGTTTA ATTATTTTAA ATCTCCTTTC ACTAATTTAA 481 TAAATTTTTT TTGCCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 541 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 601 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGACAA ATAGGCCTTT CAACCGACTG 661 AACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t