Construct: ORF TRCN0000472126

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005669.1_s317c1
Derived from:
ccsbBroadEn_08710
DNA Barcode:
GTCGTTAATGTTATGAGCGTACCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LYRM1 (57149)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472126
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57149 LYRM1 LYR motif containing 1 NM_001128301.3 99.7% 99.1% 354T>G
2 human 57149 LYRM1 LYR motif containing 1 NM_001128302.3 99.7% 99.1% 354T>G
3 human 57149 LYRM1 LYR motif containing 1 NM_001302835.2 99.7% 99.1% 354T>G
4 human 57149 LYRM1 LYR motif containing 1 NM_001302836.2 99.7% 99.1% 354T>G
5 human 57149 LYRM1 LYR motif containing 1 NM_001369632.1 99.7% 99.1% 354T>G
6 human 57149 LYRM1 LYR motif containing 1 NM_001369633.1 99.7% 99.1% 354T>G
7 human 57149 LYRM1 LYR motif containing 1 NM_001369634.1 99.7% 99.1% 354T>G
8 human 57149 LYRM1 LYR motif containing 1 NM_001369635.1 99.7% 99.1% 354T>G
9 human 57149 LYRM1 LYR motif containing 1 NM_001369636.1 99.7% 99.1% 354T>G
10 human 57149 LYRM1 LYR motif containing 1 NM_001369637.1 99.7% 99.1% 354T>G
11 human 57149 LYRM1 LYR motif containing 1 NM_001369638.1 99.7% 99.1% 354T>G
12 human 57149 LYRM1 LYR motif containing 1 NM_001369639.1 99.7% 99.1% 354T>G
13 human 57149 LYRM1 LYR motif containing 1 NM_001369641.1 99.7% 99.1% 354T>G
14 human 57149 LYRM1 LYR motif containing 1 NM_001369642.1 99.7% 99.1% 354T>G
15 human 57149 LYRM1 LYR motif containing 1 NM_001369644.1 99.7% 99.1% 354T>G
16 human 57149 LYRM1 LYR motif containing 1 NM_001369645.1 99.7% 99.1% 354T>G
17 human 57149 LYRM1 LYR motif containing 1 NM_020424.5 99.7% 99.1% 354T>G
18 human 57149 LYRM1 LYR motif containing 1 XM_017023480.1 99.7% 99.1% 354T>G
19 human 57149 LYRM1 LYR motif containing 1 NM_001369631.1 95.8% 95.2% 160_174del;369T>G
20 human 57149 LYRM1 LYR motif containing 1 XM_011545900.2 95.8% 95.2% 160_174del;369T>G
21 human 57149 LYRM1 LYR motif containing 1 XM_011545901.2 95.8% 95.2% 160_174del;369T>G
22 human 57149 LYRM1 LYR motif containing 1 XM_011545908.2 95.8% 95.2% 160_174del;369T>G
23 human 57149 LYRM1 LYR motif containing 1 XM_017023478.1 95.8% 95.2% 160_174del;369T>G
24 human 57149 LYRM1 LYR motif containing 1 XM_017023475.1 36.6% 36.4% 1_615del;775_789del;984T>G
25 human 57149 LYRM1 LYR motif containing 1 XM_017023477.1 34.6% 26.8% (many diffs)
26 human 57149 LYRM1 LYR motif containing 1 XM_017023476.1 27.7% 27.5% 1_615del;774_775ins93;876T>G
27 human 57149 LYRM1 LYR motif containing 1 NR_126520.2 22.6% (many diffs)
28 human 57149 LYRM1 LYR motif containing 1 NR_161425.1 22.3% (many diffs)
29 human 57149 LYRM1 LYR motif containing 1 NR_161431.1 21.7% (many diffs)
30 human 57149 LYRM1 LYR motif containing 1 NR_126521.2 21.3% (many diffs)
31 human 57149 LYRM1 LYR motif containing 1 NR_126528.2 21.1% (many diffs)
32 human 57149 LYRM1 LYR motif containing 1 NR_126527.2 20.2% (many diffs)
33 human 57149 LYRM1 LYR motif containing 1 NR_161432.1 19.8% (many diffs)
34 human 57149 LYRM1 LYR motif containing 1 NR_161430.1 19.6% (many diffs)
35 human 57149 LYRM1 LYR motif containing 1 XR_950823.2 14.5% (many diffs)
36 mouse 73919 Lyrm1 LYR motif containing 1 NM_001285959.1 87.1% 86.8% (many diffs)
37 mouse 73919 Lyrm1 LYR motif containing 1 NM_001285960.1 87.1% 86.8% (many diffs)
38 mouse 73919 Lyrm1 LYR motif containing 1 NM_001285961.2 87.1% 86.8% (many diffs)
39 mouse 73919 Lyrm1 LYR motif containing 1 NM_029610.3 87.1% 86.8% (many diffs)
40 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508234.3 87.1% 86.8% (many diffs)
41 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508235.3 87.1% 86.8% (many diffs)
42 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508236.3 87.1% 86.8% (many diffs)
43 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508237.3 87.1% 86.8% (many diffs)
44 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508238.3 87.1% 86.8% (many diffs)
45 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508239.3 87.1% 86.8% (many diffs)
46 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508240.3 87.1% 86.8% (many diffs)
47 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508241.3 87.1% 86.8% (many diffs)
48 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508243.3 87.1% 86.8% (many diffs)
49 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508244.3 87.1% 86.8% (many diffs)
50 mouse 73919 Lyrm1 LYR motif containing 1 XM_017312338.1 87.1% 86.8% (many diffs)
51 mouse 73919 Lyrm1 LYR motif containing 1 XM_017312339.1 87.1% 86.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
90
ORF end:
456
ORF length:
366
Sequence:
1TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT
61GATCAACAAG TTTGTACAAA AAAGTTGGCA TGACAACGGC AACACGACAA GAAGTCCTTG
121GCCTCTACCG CAGCATTTTC AGGCTTGCGA GGAAATGGCA GGCGACATCA GGGCAGATGG
181AAGACACCAT CAAAGAAAAA CAGTACATAC TAAATGAAGC CAGAACGCTG TTCCGGAAAA
241ACAAAAATCT CACGGACACA GACCTAATTA AACAGTGTAT AGATGAATGC ACAGCCAGGA
301TTGAAATTGG ACTGCATTAC AAGATTCCTT ACCCAAGGCC AATTCATCTG CCTCCAATGG
361GCCTTACCCC ACTCCGAGGC CGGGGACTTC GAAGCCAAGA GAAACTGAGG AAACTTTCCA
421AACCAGTATA TCTCAGATCT CAGGATGAAG TTTCCTACCC AACTTTCTTG TACAAAGTGG
481TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
541CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
601AGTCGTTAAT GTTATGAGCG TACCGACGCG TTAAGTCgac aatcaacctc tggattacaa
661aatttgtgaa agatt

Download FASTA (ORF) (Full)