Construct: ORF TRCN0000472254

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001479.1_s317c1
Derived from:
ccsbBroadEn_14348
DNA Barcode:
GTTTATTACAACGAGACATCGATC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EGLN2 (112398)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472254
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 112398 EGLN2 egl-9 family hypoxia induci... NM_053046.4 30.6% 30.4% 1_846del;856T>G
2 human 112398 EGLN2 egl-9 family hypoxia induci... NM_080732.4 30.6% 30.4% 1_846del;856T>G
3 human 100529264 RAB4B-EGLN2 RAB4B-EGLN2 readthrough (NM... NR_037791.1 13.1% 1_1894del;1904T>G;2270_2849del
4 mouse 112406 Egln2 egl-9 family hypoxia-induci... XM_017321929.1 39.5% 40.9% (many diffs)
5 mouse 112406 Egln2 egl-9 family hypoxia-induci... NM_053208.4 28.1% 29.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
441
ORF length:
375
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt ggcgggttac ccaggcaacg ggcTCGGGTA CGTAAGGCAC GTTGACAATC
121CCCACGGCGA TGGGCGCTGC ATCACCTGTA TCTATTACCT GAATCAGAAC TGGGACGTTA
181AGGTGCATGG CGGCCTGCTG CAGATCTTCC CTGAGGGCCG GCCCGTGGTA GCCAACATCG
241AGCCACTCTT TGACCGGTTG CTCATTTTCT GGTCTGACCG GCGGAACCCC CACGAGGTGA
301AGCCAGCCTA TGCCACCAGG TACGCCATCA CTGTCTGGTA TTTTGATGCC AAGGAGCGGG
361CAGCAGCCAA AGACAAGTAT CAGCTAGCAT CAGGACAGAA AGGTGTCCAA GTACCTGTAT
421CACAGCCGCC TACGCCCACC TACCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
481CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTTAACTT
541GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAGTT TATTACAACG
601AGACATCGAT CACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat
661t

Download FASTA (ORF) (Full)