Construct: ORF TRCN0000472324

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009538.1_s317c1
Derived from:
ccsbBroadEn_04050
DNA Barcode:
TATATATCTGTACCCCTTAACACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
C11orf49 (79096)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472324
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79096 C11orf49 chromosome 11 open reading ... NM_001003677.3 100% 100%
2 human 79096 C11orf49 chromosome 11 open reading ... NM_024113.5 98.2% 98.2% 821_822insGCTTCTTCCCTTCTTCAG
3 human 79096 C11orf49 chromosome 11 open reading ... NM_001003678.3 86.6% 81.3% (many diffs)
4 human 79096 C11orf49 chromosome 11 open reading ... XM_006718315.2 83.6% 83.4% (many diffs)
5 human 79096 C11orf49 chromosome 11 open reading ... XM_011520364.2 83.5% 83.3% 1_76del;122_123ins103
6 human 79096 C11orf49 chromosome 11 open reading ... NM_001278222.1 81.8% 81.6% 1_76del;122_123ins103;794_795insGCTTCTTCCCTTCTTCAG
7 human 79096 C11orf49 chromosome 11 open reading ... NM_001003676.2 81.3% 81.3% 822_823ins189
8 human 79096 C11orf49 chromosome 11 open reading ... XM_017018276.2 78.8% 76.8% (many diffs)
9 human 79096 C11orf49 chromosome 11 open reading ... XM_011520365.3 78.5% 75% (many diffs)
10 human 79096 C11orf49 chromosome 11 open reading ... XM_017018277.2 75% 72.1% 0_1ins121;28_29ins131
11 human 79096 C11orf49 chromosome 11 open reading ... XM_017018278.1 71.2% 71.2% 0_1ins291
12 human 79096 C11orf49 chromosome 11 open reading ... XM_017018279.1 71.2% 71.2% 0_1ins291
13 human 79096 C11orf49 chromosome 11 open reading ... XM_017018280.1 71.2% 71.2% 0_1ins291
14 human 79096 C11orf49 chromosome 11 open reading ... XM_017018281.1 71.2% 71.2% 0_1ins291
15 human 79096 C11orf49 chromosome 11 open reading ... XM_017018282.1 69.4% 69.4% 0_1ins291;530_531insGCTTCTTCCCTTCTTCAG
16 human 79096 C11orf49 chromosome 11 open reading ... NR_103471.2 51.9% (many diffs)
17 human 79096 C11orf49 chromosome 11 open reading ... NR_103472.2 51.6% (many diffs)
18 mouse 228356 1110051M20Rik RIKEN cDNA 1110051M20 gene NM_175123.4 86.4% 91.9% (many diffs)
19 mouse 228356 1110051M20Rik RIKEN cDNA 1110051M20 gene XM_011239456.2 80% 85.1% (many diffs)
20 mouse 228356 1110051M20Rik RIKEN cDNA 1110051M20 gene NM_001311144.1 76.9% 77.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1077
ORF length:
1011
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61taggcatgct gagtccggag cgcctagccc taccggacta cgagtatctg gctcagcgac
121atgtcctcac ctacatggag gatgcagtgt gccagctgct agaaaacagg gaagatatta
181gccaatatgg aattgccagg ttcttcactg aatattttaa cagtgtatgc cagggaacac
241acattctctt tcgagaattc agcttcgtcc aagccacccc ccacaatagg gtatcatttt
301tacgggcctt ctggagatgc ttccgaactg tgggcaaaaa tggcgatttg ctgaccatga
361aagaatatca ctgtttgctg caattactgt gtcctgattt cccgctggag ctcactcaga
421aagcagccag gattgtgctc atggacgatg ccatggactg cttgatgtct ttttcagatt
481tcctctttgc cttccagatc cagttttact actcagaatt cctggacagt gtggctgcca
541tctatgagga cctgctgtca ggcaagaacc ccaacacagt gattgtgccg acgtcgtcca
601gtgggcagca ccgccaacga cctgccttgg gcggggccgg cacgctggag gGCGTGGAGG
661CGTCGCTGTT CTACCAGTGT CTGGAAAACC TGTGTGATCG GCACAAGTAC AGCTGCCCAC
721CCCCAGCACT TGTCAAAGAG GCCCTCAGCA ATGTTCAGAG ACTGACCTTC TATGGATTCC
781TCATGGCTCT CTCAAAGCAC CGTGGAATCA ACCAAGCCCT CGGAGCTTTG CCTGACAAGG
841GGGATCTGAT GCACGACCCA GCAATGGATG AAGAGCTGGA ACGGCTGCTT CTTCCCTTCT
901TCAGGCTGGC CCAGGTCCCA GGCCTGGTCA ACTCGGTCAC AGCCAGTCCA GAGGCCAGTT
961GCCTGCCTTC CCGGACCCCT CCCCGGGTTG GCTCTCCCTG GAGACCTCTC CATCATTCCC
1021GAAAAGTGGA TGGAGAGAGT GATGGCTCCA CTGAAGAGAC AGACGAGTCG GAGACTTGCC
1081CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1141TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1201ATATATCTTG TGGAAAGGAC GATATATATC TGTACCCCTT AACACCACGC GTTAAGTCga
1261caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)