Construct: ORF TRCN0000472660

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016068.1_s317c1
Derived from:
ccsbBroadEn_14147
DNA Barcode:
ACATCAACTGCAGGATTCTATGTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARL17A (51326)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472660
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51326 ARL17A ADP ribosylation factor lik... XM_011524876.3 41.6% 41.3% 1_342del;350A>C
2 human 51326 ARL17A ADP ribosylation factor lik... XM_017024729.2 41.6% 41.3% 1_342del;350A>C
3 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XM_017030176.1 41.4% 41.3% 1_342del;350A>C;375T>C
4 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XM_017030180.2 41.4% 40.8% 1_342del;350A>C;587G>C
5 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XM_017030179.2 37.5% 37% (many diffs)
6 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XM_011546367.3 35.2% 30% (many diffs)
7 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XM_011546387.2 35% 30% (many diffs)
8 human 51326 ARL17A ADP ribosylation factor lik... XM_011524875.3 34.9% 30% (many diffs)
9 human 100506084 ARL17B ADP ribosylation factor lik... NM_001363805.1 32.8% 31.1% (many diffs)
10 human 51326 ARL17A ADP ribosylation factor lik... XM_011524877.3 32.8% 31.1% (many diffs)
11 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XM_011546369.3 32.8% 31.1% (many diffs)
12 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XM_011546389.2 32.7% 31.1% (many diffs)
13 human 100506084 ARL17B ADP ribosylation factor lik... NM_001039083.4 31.6% 31.1% (many diffs)
14 human 51326 ARL17A ADP ribosylation factor lik... NM_001113738.1 31.6% 31.1% (many diffs)
15 human 105376844 LOC105376844 uncharacterized LOC105376844 XR_934912.3 25.3% (many diffs)
16 human 105376844 LOC105376844 uncharacterized LOC105376844 XR_934914.3 24.6% (many diffs)
17 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756211.2 23.8% (many diffs)
18 human 51326 ARL17A ADP ribosylation factor lik... XR_934477.3 23.6% (many diffs)
19 human 107985086 LOC107985086 uncharacterized LOC107985086 XR_001752899.1 22.9% (many diffs)
20 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756214.1 22.5% (many diffs)
21 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951555.2 22.5% (many diffs)
22 human 105369225 LOC105369225 uncharacterized LOC105369225 XR_001756625.2 21.8% (many diffs)
23 human 51326 ARL17A ADP ribosylation factor lik... XR_934479.2 21.5% (many diffs)
24 human 105369225 LOC105369225 uncharacterized LOC105369225 XR_001752910.2 21.3% (many diffs)
25 human 105369225 LOC105369225 uncharacterized LOC105369225 XR_001756626.2 21.3% (many diffs)
26 human 101929774 LOC101929774 uncharacterized LOC101929774 XR_951561.3 21.1% (many diffs)
27 human 51326 ARL17A ADP ribosylation factor lik... XR_934475.3 21% (many diffs)
28 human 101929774 LOC101929774 uncharacterized LOC101929774 XR_951565.2 20.6% (many diffs)
29 human 51326 ARL17A ADP ribosylation factor lik... XR_934476.3 20.1% (many diffs)
30 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951553.3 19.1% (many diffs)
31 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756217.1 19.1% (many diffs)
32 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951558.2 19% (many diffs)
33 human 10230 NBR2 neighbor of BRCA1 lncRNA 2 NR_138145.1 17.3% (many diffs)
34 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_002958881.1 15.8% (many diffs)
35 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_001756189.1 15.5% (many diffs)
36 human 10230 NBR2 neighbor of BRCA1 lncRNA 2 NR_003108.2 15% (many diffs)
37 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756215.1 14.8% (many diffs)
38 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951557.2 14.7% (many diffs)
39 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756210.2 14.6% (many diffs)
40 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756213.2 13.6% (many diffs)
41 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951554.2 13.6% (many diffs)
42 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951556.2 11.4% (many diffs)
43 human 105376844 LOC105376844 uncharacterized LOC105376844 XR_934913.3 11.4% (many diffs)
44 human 51326 ARL17A ADP ribosylation factor lik... XR_934478.3 11% (many diffs)
45 human 51326 ARL17A ADP ribosylation factor lik... XR_934480.3 9.4% (many diffs)
46 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756212.2 9.1% (many diffs)
47 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756216.2 8.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
156
ORF end:
402
ORF length:
246
Sequence:
1GCACTTGATG TAATTCTCCT TGGAATTTGC CCTTTTTGAG TTTGGATCTT GGTTCATTCT
61CAAGCCTCAG ACAGTGGTTC AAAGTTTTTT TCTTCCATTT CAGGTGTCGT GAGGCTAGCA
121TCGATTGATC AACAAGTTTG TACAAAAAAG TTGGCATGTG GACAGGAGGT AGAAGTCATC
181CTTTCCTCCC CCATAGCAGC AGGTGTGCAG GCTCTGGTGG TCAGCTGGAC TCCATACTCC
241CCCACCAGTC ACCAGCCTGG GGACCGTGGG GCTGCAAGGA CCTCAGCAGC GGTTTCCCAA
301GTTTCCTGAC TTCTTCCATC CTCTGGAAAT CAGCTGTGGT TCGTGAGCCA CACATCTCCC
361CACACCAAGC TCCTCCATAC AAGACCTCGG ACTGCATCAC GTACCCAACT TTCTTGTACA
421AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
481AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
541AGGACGAACA TCAACTGCAG GATTCTATGT GACGCGTTAA GTCgacaatc aacctctgga
601ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)