Construct: ORF TRCN0000472684

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013086.1_s317c1
Derived from:
ccsbBroadEn_11782
DNA Barcode:
TAAATGCATCCAACAAAAACATAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MTHFD1L (25902)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472684
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25902 MTHFD1L methylenetetrahydrofolate d... NM_001350487.1 84.4% 84.4% 1_405del;2166C>G
2 human 25902 MTHFD1L methylenetetrahydrofolate d... NM_001350492.1 84.3% 84.3% 1_408del;2169C>G
3 human 25902 MTHFD1L methylenetetrahydrofolate d... NM_001350493.1 84.3% 84.3% 1_408del;2169C>G
4 human 25902 MTHFD1L methylenetetrahydrofolate d... XM_011535734.2 81.6% 79.4% (many diffs)
5 human 25902 MTHFD1L methylenetetrahydrofolate d... XM_017010705.1 81.6% 79.4% (many diffs)
6 human 25902 MTHFD1L methylenetetrahydrofolate d... XM_011535732.2 81.5% 79.3% (many diffs)
7 human 25902 MTHFD1L methylenetetrahydrofolate d... XM_011535733.2 81.5% 79.3% (many diffs)
8 human 25902 MTHFD1L methylenetetrahydrofolate d... NM_001350486.1 80.3% 80.3% 1_537del;2298C>G
9 human 25902 MTHFD1L methylenetetrahydrofolate d... NM_001242768.1 80.2% 80.2% 1_540del;2301C>G
10 human 25902 MTHFD1L methylenetetrahydrofolate d... XM_011535731.2 77.7% 75.7% (many diffs)
11 human 25902 MTHFD1L methylenetetrahydrofolate d... XM_024446395.1 77.6% 77.7% 1_630del;2391C>G
12 human 25902 MTHFD1L methylenetetrahydrofolate d... XM_011535730.2 77.6% 75.6% (many diffs)
13 human 25902 MTHFD1L methylenetetrahydrofolate d... NM_015440.4 74.9% 74.9% 1_735del;2496C>G
14 human 25902 MTHFD1L methylenetetrahydrofolate d... NM_001242767.1 74.8% 74.8% 1_738del;2499C>G
15 human 25902 MTHFD1L methylenetetrahydrofolate d... XM_017010702.2 74.8% 74.8% 1_738del;2499C>G
16 human 25902 MTHFD1L methylenetetrahydrofolate d... XM_017010703.2 74.8% 74.8% 1_738del;2499C>G
17 human 25902 MTHFD1L methylenetetrahydrofolate d... XM_005266907.5 72.6% 70.7% (many diffs)
18 human 25902 MTHFD1L methylenetetrahydrofolate d... XM_011535729.3 71.9% 72% (many diffs)
19 human 25902 MTHFD1L methylenetetrahydrofolate d... XR_001743322.2 65.2% (many diffs)
20 human 25902 MTHFD1L methylenetetrahydrofolate d... NR_146719.1 61.4% (many diffs)
21 human 25902 MTHFD1L methylenetetrahydrofolate d... XR_002956274.1 61% (many diffs)
22 human 25902 MTHFD1L methylenetetrahydrofolate d... NR_146720.1 49.9% (many diffs)
23 human 25902 MTHFD1L methylenetetrahydrofolate d... XM_011535737.3 47.5% 47.2% (many diffs)
24 human 25902 MTHFD1L methylenetetrahydrofolate d... XM_011535738.3 47.3% 47.2% 1_738del;2128_2129insTGACCGAA;2130_2131ins799
25 human 25902 MTHFD1L methylenetetrahydrofolate d... NM_001350490.1 36.7% 36.6% 1_1delAins1390;372C>G
26 human 25902 MTHFD1L methylenetetrahydrofolate d... XM_005266911.5 36.5% 36.4% (many diffs)
27 human 25902 MTHFD1L methylenetetrahydrofolate d... XM_024446396.1 18.8% 17.8% (many diffs)
28 human 101929583 LOC101929583 methylenetetrahydrofolate d... NR_136299.1 15.4% (many diffs)
29 mouse 270685 Mthfd1l methylenetetrahydrofolate d... NM_001170785.1 64.5% 69.6% (many diffs)
30 mouse 270685 Mthfd1l methylenetetrahydrofolate d... NM_001170786.1 64.5% 69.6% (many diffs)
31 mouse 270685 Mthfd1l methylenetetrahydrofolate d... NM_172308.4 64.5% 69.6% (many diffs)
32 mouse 270685 Mthfd1l methylenetetrahydrofolate d... XM_006512449.3 41.5% 43.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2265
ORF length:
2199
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac aatgagcatc cagtggaaaa cacgccagct tcaaagcaag cttcacgagg
121ctgacattgt ggtcctaggc tcacctaagc cagaagagat tccccttact tggatacaac
181caggaactac tgttctcaac tgctcccatg acttcctgtc agggaaggtt gggtgtggct
241ctccaagaat acattttggt ggactcattg aggaagatga tgtgattctc cttgctgcag
301ctctgcgaat tcagaacatg gtcagtagtg gaaggagatg gcttcgtgaa cagcagcaca
361ggcggtggag acttcactgc ttgaaacttc agcctctctc ccctgtgcca agtgacattg
421agatttcaag aggacaaact ccaaaagctg tggatgtcct tgccaaggag attggattgc
481ttgcagatga aattgaaatc tatggcaaaa gcaaagccaa agtacgtttg tccgtgctag
541aaaggttaaa ggatcaagca gatggaaaat acgtcttagt tgctgggatc acacccaccc
601ctcttggaga agggaagagc acagtcacca tcgggcttgt gcaggctctg accgcacacc
661tgaatgtcaa ctcctttgcc tgcttgaggc agccttccca aggaccgacg tttggagtga
721aaggaggagc cgcgggtggt ggatatgccc aggtcatccc catggaggag ttcaaccttc
781acttgactgg agacatccac gccatcaccg ctgccaataa cttgctggct gccgccatcg
841acacgaggat tcttcatgaa aacacgcaaa cagataaggc tctgtataat cggctggttc
901ctttagtgaa tggtgtcaga gaattttcag aaattcagct tgctcggcta aaaaaactgg
961gaataaataa gactgatccg agcacactga cagaagagga agtgagtaaa tttgcccgtc
1021tcgacatcga cccatctacc atcacgtggc agagagtatt ggatacaaat gaccgatttc
1081tacgaaaaat aaccatcggg cagggaaaca cagagaaggg ccattaccgg caggcgcagt
1141ttgacatcgc agtggccagc gagatcatgg cggtgctggc cctgacggac agcctcgcag
1201acatgaaggc acggctggga aggatggtgg tggccagtga caaaagcggg cagcctgtga
1261cagcagatga tttgggggtg acaggtgctt tgacagtttt gatgaaagat gcaataaaac
1321caaacctgat gcagaccctg gaagggacac ctgtgttcgt gcatgcgggc ccttttgcta
1381acattgctca cggcaactct tcagtgttgg ctgataaaat tgccctgaaa ctggttggtg
1441aagaaggatt tgtagtgacc gaagctggct ttggtgctga catcggaatg gagaaattct
1501tcaacatcaa gtgccgagct tccggcttgg tgcccaacgt ggttgtgtta gtggcaacgg
1561tgcgagctct gaagatgcat ggaggcgggc caagtgtaac ggctggtgtt cctcttaaga
1621aagaatatac agaggagaac atccagctgg tggcagacgg ctgctgtaac ctccagaagc
1681aaattcagat cactcagctc tttggggttc ccgttgtggt ggctctgaat gtcttcaaga
1741ccgacacccg cgctgagatt gacttggtgt gtgagcttgc aaagcgggct ggtgcctttg
1801atgcagtccc cTGCTATCAC TGGTCGGTTG GTGGAAAAGG ATCGGTGGAC TTGGCTCGGG
1861CTGTGAGAGA GGCTGCGAGT AAAAGAAGCC GATTCCAGTT CCTGTATGAT GTTCAGGTTC
1921CAATTGTGGA CAAGATAAGG ACCATTGCTC AGGCTGTCTA TGGAGCCAAA GATATTGAAC
1981TCTCTCCTGA GGCACAAGCC AAAATAGATC GTTACACTCA ACAGGGTTTT GGAAATTTGC
2041CCATCTGCAT GGCAAAGACC CACCTTTCTC TATCTCACCA ACCTGACAAA AAAGGTGTGC
2101CAAGGGACTT CATCTTACCT ATCAGTGACG TCCGGGCCAG CATAGGCGCT GGGTTCATTT
2161ACCCTTTGGT CGGAACGATG AGCACCATGC CAGGACTGCC CACCCGGCCC TGCTTTTATG
2221ACATAGATCT TGATACCGAA ACAGAACAAG TTAAAGGCTT GTTCTACCCA ACTTTCTTGT
2281ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
2341AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
2401GAAAGGACGA TAAATGCATC CAACAAAAAC ATAAACGCGT TAAGTCgaca atcaacctct
2461ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)