Construct: ORF TRCN0000472785

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019029.3_s317c1
Derived from:
ccsbBroadEn_14680
DNA Barcode:
CCCCCACGAGTCAAACATTTAGTC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
JAK2 (3717)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472785
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3717 JAK2 Janus kinase 2 NM_001322194.1 99.9% 100% 3396_3397insTGA
2 human 3717 JAK2 Janus kinase 2 NM_001322195.1 99.9% 100% 3396_3397insTGA
3 human 3717 JAK2 Janus kinase 2 NM_001322196.1 99.9% 100% 3396_3397insTGA
4 human 3717 JAK2 Janus kinase 2 NM_004972.3 99.9% 100% 3396_3397insTGA
5 human 3717 JAK2 Janus kinase 2 NM_001322204.1 86.7% 86.8% 0_1ins447;2949_2950insTGA
6 human 3717 JAK2 Janus kinase 2 NM_001322198.1 64.1% 64.2% 0_1ins1215;2181_2182insTGA
7 human 3717 JAK2 Janus kinase 2 NM_001322199.1 64.1% 64.2% 0_1ins1215;2181_2182insTGA
8 mouse 16452 Jak2 Janus kinase 2 NM_001048177.2 88.5% 93.7% (many diffs)
9 mouse 16452 Jak2 Janus kinase 2 NM_008413.3 88.5% 93.7% (many diffs)
10 mouse 16452 Jak2 Janus kinase 2 XM_011247155.2 88.5% 93.7% (many diffs)
11 mouse 16452 Jak2 Janus kinase 2 XM_006526713.3 85% 89.8% (many diffs)
12 mouse 16452 Jak2 Janus kinase 2 XM_006526714.3 73.4% 78% (many diffs)
13 mouse 16452 Jak2 Janus kinase 2 XM_017318068.1 57% 61.2% (many diffs)
14 mouse 16452 Jak2 Janus kinase 2 XM_006526715.3 46.5% 48.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3465
ORF length:
3396
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gggaatggcc tgccttacga tgacagaaat ggagggaaca tccacctctt
121ctatatatca gaatggtgat atttctggaa atgccaattc tatgaagcaa atagatccag
181ttcttcaggt gtatctttac cattcccttg ggaaatctga ggcagattat ctgacctttc
241catctgggga gtatgttgca gaagaaatct gtattgctgc ttctaaagct tgtggtatca
301cacctgtgta tcataatatg tttgctttaa tgagtgaaac agaaaggatc tggtatccac
361ccaaccatgt cttccatata gatgagtcaa ccaggcataa tgtactctac agaataagat
421tttactttcc tcgttggtat tgcagtggca gcaacagagc ctatcggcat ggaatatctc
481gaggtgctga agctcctctt cttgatgact ttgtcatgtc ttacctcttt gctcagtggc
541ggcatgattt tgtgcacgga tggataaaag tacctgtgac tcatgaaaca caggaagaat
601gtcttgggat ggcagtgtta gatatgatga gaatagccaa agaaaacgat caaaccccac
661tggccatcta taactctatc agctacaaga cattcttacc aaaatgtatt cgagcaaaga
721tccaagacta tcatattttg acaaggaagc gaataaggta cagatttcgc agatttattc
781agcaattcag ccaatgcaaa gccactgcca gaaacttgaa acttaagtat cttataaatc
841tggaaactct gcagtctgcc ttctacacag agaaatttga agtaaaagaa cctggaagtg
901gtccttcagg tgaggagatt tttgcaacca ttataataac tggaaacggt ggaattcagt
961ggtcaagagg gaaacataaa gaaagtgaga cactgacaga acaggattta cagttatatt
1021gcgattttcc taatattatt gatgtcagta ttaagcaagc aaaccaagag ggttcaaatg
1081aaagccgagt tgtaactatc cataagcaag atggtaaaaa tctggaaatt gaacttagct
1141cattaaggga agctttgtct ttcgtgtcat taattgatgg atattataga ttaactgcag
1201atgcacatca ttacctctgt aaagaagtag cacctccagc cgtgcttgaa aatatacaaa
1261gcaactgtca tggcccaatt tcgatggatt ttgccattag taaactgaag aaagcaggta
1321atcagactgg actgtatgta cttcgatgca gtcctaagga ctttaataaa tattttttga
1381cttttgctgt cgagcgagaa aatgtcattg aatataaaca ctgtttgatt acaaaaaatg
1441agaatgaaga gtacaacctc agtgggacaa agaagaactt cagcagtctt aaagatcttt
1501tgaattgtta ccagatggaa actgttcgct cagacaatat aattttccag tttactaaat
1561gctgtccccc aaagccaaaa gataaatcaa accttctagt cttcagaacg aatggtgttt
1621ctgatgtacc aacctcacca acattacaga ggcctactca tatgaaccaa atggtgtttc
1681acaaaatcag aaatgaagat ttgatattta atgaaagcct tggccaaggc acttttacaa
1741agatttttaa aggcgtacga agagaagtag gagactacgg tcaactgcat gaaacagaag
1801ttcttttaaa agttctggat aaagcacaca gaaactattc agagtctttc tttgaagcag
1861caagtatgat gagcaagctt tctcacaagc atttggtttt aaattatgga gtatgtgtct
1921gtggagacga gaatattctg gttcaggagt ttgtaaaatt tggatcacta gatacatatc
1981tgaaaaagaa taaaaattgt ataaatatat tatggaaact tgaagttgct aaacagttgg
2041catgggccat gcattttcta gaagaaaaca cccttattca tgggaatgta tgtgccaaaa
2101atattctgct tatcagagaa gaagacagga agacaggaaa tcctcctttc atcaaactta
2161gtgatcctgg cattagtatt acagttttgc caaaggacat tcttcaggag agaataccat
2221gggtaccacc tgaatgcatt gaaaatccta aaaatttaaa tttggcaaca gacaaatgga
2281gttttggtac cactttgtgg gaaatctgca gtggaggaga taaacctcta agtgctctgg
2341attctcaaag aaagctacaa ttttatgaag ataggcatca gcttcctgca ccaaagtggg
2401cagaattagc aaaccttata aataattgta tggattatga accagatttc aggccttctt
2461tcagagccat catacgagat cttaacagtt tgtttactcc agattatgaa ctattaacag
2521aaaatgacat gttaccaaat atgaggatag gtgccctggg gttttctggt gcctttgaag
2581accgggatcc tacacagttt gaagagagac atttgaaatt tctacagcaa cttggcaagg
2641gtaattttgg gagtgtggag atgtgccggt atgaccctct acaggacaac actggggagg
2701tggtcgctgt aaaaaagctt cagcatagta ctgaagagca cctaagagac tttgaaaggg
2761aaattgaaat cctgaaatcc ctacagcatg acaacattgt aaagtacaag ggagtgtgct
2821acagtgctgg tcggcgtaat ctaaaattaa ttatggaata tttaccatat ggaagtttac
2881gagactatct tcaaaaacat aaagaacgga tagatcacat aaaacttctg cagtacacat
2941ctcagatatg caagggtatg gagtatcttg gtacaaaaag gtatatccac agggatctgg
3001caacgagaaa tatattggtg gagaacgaga acagagttaa aattGGAGAT TTTGGGTTAA
3061CCAAAGTCTT GCCACAAGAC AAAGAATACT ATAAAGTAAA AGAACCTGGT GAAAGTCCCA
3121TATTCTGGTA TGCTCCAGAA TCACTGACAG AGAGCAAGTT TTCTGTGGCC TCAGATGTTT
3181GGAGCTTTGG AGTGGTTCTG TATGAACTTT TCACATACAT TGAGAAGAGT AAAAGTCCAC
3241CAGCGGAATT TATGCGTATG ATTGGCAATG ACAAACAAGG ACAGATGATC GTGTTCCATT
3301TGATAGAACT TTTGAAGAAT AATGGAAGAT TACCAAGACC AGATGGATGC CCAGATGAGA
3361TCTATATGAT CATGACAGAA TGCTGGAACA ATAATGTAAA TCAACGCCCC TCCTTTAGGG
3421ATCTAGCTCT TCGAGTGGAT CAAATAAGGG ATAACATGGC TGGATGATGC CCAACTTTCT
3481TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
3541CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
3601GTGGAAAGGA CGACCCCCAC GAGTCAAACA TTTAGTCACG CGTTAAGTCg acaatcaacc
3661tctggattac aaaatttgtg aaagatt

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