Construct: ORF TRCN0000473036
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011887.1_s317c1
- Derived from:
- ccsbBroadEn_15172
- DNA Barcode:
- GTATGCACTTAATAACCCTCGCGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZFP91 (80829)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473036
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80829 | ZFP91 | ZFP91 zinc finger protein | NM_001197051.2 | 99.9% | 99.8% | 109G>A |
| 2 | human | 80829 | ZFP91 | ZFP91 zinc finger protein | NM_053023.5 | 99.7% | 99.6% | 109G>A;615_617delTAG |
| 3 | human | 386607 | ZFP91-CNTF | ZFP91-CNTF readthrough (NMD... | NR_024091.1 | 46.4% | (many diffs) | |
| 4 | mouse | 109910 | Zfp91 | zinc finger protein 91 | NM_053009.3 | 90.2% | 91.4% | (many diffs) |
| 5 | mouse | 664779 | Gm44505 | predicted readthrough trans... | NR_024093.1 | 45.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1773
- ORF length:
- 1707
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgcc gggggagacg gaagagccga gacccccgga gcagcaggac caggaagggg 121 gagaggcggc caaggcggct ccggaggagc cccaacaacg gccccctgag gcgatcgcgg 181 cggcgcctgc agggaccact agcagccgcg tgctgagggg aggtcgggac cgaggccggg 241 ccgctgcggc cgccgccgcc gcagctgtgt cccgccggag gaaggccgag tatccccgcc 301 ggcggaggag cagccccagc gccaggcctc ccgacgtccc cgggcagcag ccccaggccg 361 cgaagtcccc gtctccagtt cagggcaaga agagtccgcg actcctatgc atagaaaaag 421 taacaactga taaagatccc aaggaagaaa aagaggaaga agacgattct gccctccctc 481 aggaagtttc cattgctgca tctagaccta gccggggctg gcgtagtagt aggacatctg 541 tttctcgcca tcgtgataca gagaacaccc gaagctctcg gtccaagacc ggttcattgc 601 agctcatttg caagtcagaa ccaaatacag accaacttga ttatgatgtt ggagaagagc 661 atcagtctcc aggtggcatt agtgaagagg aagaggagga ggaagaagag atgttaatca 721 gtgaagagga gataccattc aaagatgatc caagagatga gacctacaaa ccccacttag 781 aaagggaaac cccaaagcca cggagaaaat cagggaaggt aaaagaagag aaggagaaga 841 aggaaattaa agtggaagta gaggtggagg tgaaagaaga ggagaatgaa attagagagg 901 atgaggaacc tccaaggaag agaggaagaa gacgaaaaga tgacaaaagt ccacgtttac 961 ccaaaaggag aaaaaagcct ccaatccagt atgtccgttg tgagatggaa ggatgtggaa 1021 ctgtccttgc ccatcctcgc tatttgcagc accacattaa ataccagcat ttgctgaaga 1081 agaaatatgt atgtccccat ccctcctgtg gacgactctt caggcttcag aagcaacttc 1141 tgcgacatgc caaacatcat acagatcaaa gggattatat ctgtgaatat tgtgctcggg 1201 ccttcaagag ttcccacaat ctggcagtgc accggatgat tcacactggc gagaagccat 1261 tacaatgtga gatctgtgga tttacttgTC GACAAAAGGC ATCTCTTAAT TGGCACATGA 1321 AGAAACATGA TGCAGACTCC TTCTACCAGT TTTCTTGCAA TATCTGTGGC AAAAAATTTG 1381 AGAAGAAGGA CAGCGTAGTG GCACACAAGG CAAAAAGCCA CCCTGAGGTG CTGATTGCAG 1441 AAGCTCTGGC TGCCAATGCA GGCGCCCTCA TCACCAGCAC AGATATCTTG GGCACTAACC 1501 CAGAGTCCCT GACGCAGCCT TCAGATGGTC AGGGTCTTCC TCTTCTTCCT GAGCCCTTGG 1561 GAAACTCAAC CTCTGGAGAG TGCCTACTGT TAGAAGCTGA AGGGATGTCA AAGTCATACT 1621 GCAGTGGGAC GGAACGGGTG AGCCTGATGG CTGATGGGAA GATCTTTGTG GGAAGCGGCA 1681 GCAGTGGAGG CACTGAAGGG CTGGTTATGA ACTCAGATAT ACTCGGTGCT ACCACAGAGG 1741 TTCTGATTGA AGATTCAGAC TCTGCCGGAC CTTACCCAAC TTTCTTGTAC AAAGTGGTTG 1801 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 1861 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAGT 1921 ATGCACTTAA TAACCCTCGC GTACGCGTTA AGTCgacaat caacctctgg attacaaaat 1981 ttgtgaaaga tt