Transcript: Human NM_053023.5

Homo sapiens ZFP91 zinc finger protein (ZFP91), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-03
Taxon:
Homo sapiens (human)
Gene:
ZFP91 (80829)
Length:
5776
CDS:
220..1932

Additional Resources:

NCBI RefSeq record:
NM_053023.5
NBCI Gene record:
ZFP91 (80829)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_053023.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000285253 GCTCTTAAAGTGAGGGTTATT pLKO_005 2180 3UTR 100% 13.200 18.480 N ZFP91 n/a
2 TRCN0000274820 TGGTTATGAACTCAGATATAC pLKO_005 1859 CDS 100% 13.200 10.560 N ZFP91 n/a
3 TRCN0000234174 CTACCACAGAGGTTCTGATTG pLKO_005 1886 CDS 100% 10.800 7.560 N Zfp91 n/a
4 TRCN0000018073 CCAAACATCATACAGATCAAA pLKO.1 1307 CDS 100% 5.625 2.813 Y ZFP91 n/a
5 TRCN0000018076 CGCGACTCCTATGCATAGAAA pLKO.1 551 CDS 100% 5.625 2.813 Y ZFP91 n/a
6 TRCN0000274884 CGCGACTCCTATGCATAGAAA pLKO_005 551 CDS 100% 5.625 2.813 Y ZFP91 n/a
7 TRCN0000018074 CGCTATTTGCAGCACCACATT pLKO.1 1195 CDS 100% 4.950 2.475 Y ZFP91 n/a
8 TRCN0000274883 CGCTATTTGCAGCACCACATT pLKO_005 1195 CDS 100% 4.950 2.475 Y ZFP91 n/a
9 TRCN0000018077 GCAGACTCCTTCTACCAGTTT pLKO.1 1489 CDS 100% 4.950 2.475 Y ZFP91 n/a
10 TRCN0000274821 GCAGACTCCTTCTACCAGTTT pLKO_005 1489 CDS 100% 4.950 2.475 Y ZFP91 n/a
11 TRCN0000138934 GAAGAGGAGGAGGAAGAAGAA pLKO.1 847 CDS 100% 4.950 2.475 Y PTMA n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_053023.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15172 pDONR223 98.6% 99.7% 99.6% None 109G>A;615_617delTAG n/a
2 ccsbBroad304_15172 pLX_304 0% 99.7% 99.6% V5 109G>A;615_617delTAG n/a
3 TRCN0000473036 GTATGCACTTAATAACCCTCGCGT pLX_317 28.6% 99.7% 99.6% V5 109G>A;615_617delTAG n/a
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