Transcript: Mouse XM_006518664.3

PREDICTED: Mus musculus leukocyte cell derived chemotaxin 1 (Lect1), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cnmd (16840)
Length:
1466
CDS:
185..1186

Additional Resources:

NCBI RefSeq record:
XM_006518664.3
NBCI Gene record:
Cnmd (16840)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006518664.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000175712 GAAGGGATCTGCTGTATAGAA pLKO.1 1016 CDS 100% 5.625 7.875 N Cnmd n/a
2 TRCN0000193802 CCATGGCCTTACAATTACCAA pLKO.1 1094 CDS 100% 3.000 4.200 N Cnmd n/a
3 TRCN0000193246 CCAAGAGACCACAAAGTATTT pLKO.1 1266 3UTR 100% 13.200 9.240 N Cnmd n/a
4 TRCN0000174833 GAAACTACAAGATGGGTCAAT pLKO.1 436 CDS 100% 4.950 3.465 N Cnmd n/a
5 TRCN0000175039 GTTGAGAACCAAAGAAGCATA pLKO.1 1232 3UTR 100% 4.950 3.465 N Cnmd n/a
6 TRCN0000193634 CTACATCAAAGCACAGGTGAA pLKO.1 580 CDS 100% 4.050 2.835 N Cnmd n/a
7 TRCN0000174948 GAAGCAATTGAAGTCAACGAT pLKO.1 512 CDS 100% 3.000 2.100 N Cnmd n/a
8 TRCN0000173896 GCTACATCAAAGCACAGGTGA pLKO.1 579 CDS 100% 2.640 1.848 N Cnmd n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006518664.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07740 pDONR223 100% 85.7% 88.6% None (many diffs) n/a
2 ccsbBroad304_07740 pLX_304 0% 85.7% 88.6% V5 (many diffs) n/a
3 TRCN0000473166 CACCTTTTGCCTATATAACCACGC pLX_317 41.6% 85.7% 88.6% V5 (many diffs) n/a
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