Construct: ORF TRCN0000473421
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008334.1_s317c1
- Derived from:
- ccsbBroadEn_11715
- DNA Barcode:
- CTCTCTCTTATGAGCTGAGAACAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- EHBP1 (23301)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473421
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354222.2 | 11.9% | 11.9% | (many diffs) |
| 2 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354221.2 | 11% | 11% | (many diffs) |
| 3 | human | 23301 | EHBP1 | EH domain binding protein 1 | XM_017003654.2 | 9.4% | 9.4% | (many diffs) |
| 4 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354219.2 | 9% | 9% | (many diffs) |
| 5 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354220.1 | 9% | 9% | (many diffs) |
| 6 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001142615.3 | 9% | 9% | (many diffs) |
| 7 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001142616.3 | 9% | 9% | (many diffs) |
| 8 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354218.1 | 9% | 9% | (many diffs) |
| 9 | human | 23301 | EHBP1 | EH domain binding protein 1 | XM_011532717.2 | 8.7% | 8.7% | (many diffs) |
| 10 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354217.1 | 8.7% | 8.7% | (many diffs) |
| 11 | human | 23301 | EHBP1 | EH domain binding protein 1 | XM_006711971.3 | 8.7% | 8.7% | (many diffs) |
| 12 | human | 23301 | EHBP1 | EH domain binding protein 1 | XM_017003650.2 | 8.7% | 8.7% | (many diffs) |
| 13 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001142614.2 | 8.7% | 8.7% | (many diffs) |
| 14 | human | 23301 | EHBP1 | EH domain binding protein 1 | XM_005264227.1 | 8.7% | 8.7% | (many diffs) |
| 15 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354215.1 | 8.5% | 8.5% | (many diffs) |
| 16 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354216.2 | 8.5% | 8.5% | (many diffs) |
| 17 | human | 23301 | EHBP1 | EH domain binding protein 1 | XM_011532716.3 | 8.5% | 8.5% | (many diffs) |
| 18 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354212.1 | 8.5% | 8.5% | (many diffs) |
| 19 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354213.1 | 8.5% | 8.5% | (many diffs) |
| 20 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_001354214.1 | 8.5% | 8.5% | (many diffs) |
| 21 | human | 23301 | EHBP1 | EH domain binding protein 1 | NM_015252.5 | 8.5% | 8.5% | (many diffs) |
| 22 | human | 23301 | EHBP1 | EH domain binding protein 1 | XM_005264226.3 | 8.5% | 8.5% | (many diffs) |
| 23 | human | 23301 | EHBP1 | EH domain binding protein 1 | XM_011532715.3 | 8.5% | 8.5% | (many diffs) |
| 24 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_017314440.1 | 8.5% | 9% | (many diffs) |
| 25 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_017314439.1 | 8.2% | 8.7% | (many diffs) |
| 26 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243693.2 | 8.2% | 8.7% | (many diffs) |
| 27 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | NM_153078.4 | 8.2% | 8.7% | (many diffs) |
| 28 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_017314438.1 | 8.1% | 8.6% | (many diffs) |
| 29 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243692.2 | 8.1% | 8.6% | (many diffs) |
| 30 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243691.2 | 8.1% | 8.6% | (many diffs) |
| 31 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243690.2 | 8.1% | 8.5% | (many diffs) |
| 32 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243689.2 | 8% | 8.5% | (many diffs) |
| 33 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | NM_001252515.1 | 8% | 8.5% | (many diffs) |
| 34 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243688.2 | 8% | 8.5% | (many diffs) |
| 35 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_017314437.1 | 8% | 8.5% | (many diffs) |
| 36 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243687.2 | 8% | 8.5% | (many diffs) |
| 37 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243686.2 | 8% | 8.5% | (many diffs) |
| 38 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243685.2 | 7.8% | 8.3% | (many diffs) |
| 39 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243681.2 | 7.8% | 8.3% | (many diffs) |
| 40 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243682.2 | 7.8% | 8.3% | (many diffs) |
| 41 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243683.2 | 7.8% | 8.3% | (many diffs) |
| 42 | mouse | 216565 | Ehbp1 | EH domain binding protein 1 | XM_011243684.2 | 7.8% | 8.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 384
- ORF length:
- 318
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc ttcagtttGG AAGAGACTGC AGCGTGTGGG AAAACATGCA TCCAAGTTCC 121 AGTTTGTGGC CTCCTACCAG GAGCTCATGG TTGAGTGTAC GAAGAAATGG CAACCAGATA 181 AACTGGTGGT AGTTTGGACC AGAAGAAGCC GAAGGAAGTC TTCTAAGGCA CATAGCTGGC 241 AACCTGGAAT AAAAAATCCC TATCGTGGTG TTGTTGTGTG GCCTGTTCCT GAAAACATTG 301 AAATCACTGT AACACTTTTT AAGGATCCTC ATGCGGAAGA ATTTGAAGAC AAAGAGTGGA 361 CATTTGTTAT AGAAAATGTA AGCTACCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 421 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 481 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAC TCTCTCTTAT 541 GAGCTGAGAA CATACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 601 att