Construct: ORF TRCN0000473611

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001278.1_s317c1
Derived from:
ccsbBroadEn_11690
DNA Barcode:
TCAATCCTGAGCTGCAGGCAATGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PHLDB1 (23187)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473611
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23187 PHLDB1 pleckstrin homology like do... XM_011542715.3 14% 14% 1_1860del
2 human 23187 PHLDB1 pleckstrin homology like do... NM_001144759.3 7.6% 7.6% 1_3654del
3 human 23187 PHLDB1 pleckstrin homology like do... XM_005271474.5 7.5% 7.5% 1_3720del
4 human 23187 PHLDB1 pleckstrin homology like do... XM_005271473.3 7.3% 7.3% 1_3792del;3956_3988del
5 human 23187 PHLDB1 pleckstrin homology like do... NM_001144758.3 7.3% 7.3% 1_3795del;3959_3991del
6 human 23187 PHLDB1 pleckstrin homology like do... NM_015157.4 7.3% 7.3% 1_3795del;3959_3991del
7 human 23187 PHLDB1 pleckstrin homology like do... XM_005271472.3 7.2% 7.2% 1_3837del;4001_4033del
8 human 23187 PHLDB1 pleckstrin homology like do... XM_006718803.3 7.1% 7.1% 1_3921del
9 human 23187 PHLDB1 pleckstrin homology like do... XM_005271471.3 7.1% 7.1% 1_3933del
10 human 23187 PHLDB1 pleckstrin homology like do... XM_006718802.3 7.1% 7.1% 1_3921del;4085_4117del
11 human 23187 PHLDB1 pleckstrin homology like do... XM_011542713.2 7.1% 7.1% 1_3921del;4085_4117del
12 human 23187 PHLDB1 pleckstrin homology like do... XM_011542711.2 7.1% 7.1% 1_3924del;4088_4120del
13 human 23187 PHLDB1 pleckstrin homology like do... XM_005271470.3 7% 7% 1_3933del;4097_4129del
14 human 23187 PHLDB1 pleckstrin homology like do... XM_005271469.3 7% 7% 1_3978del
15 human 23187 PHLDB1 pleckstrin homology like do... XM_006718801.3 7% 7% 1_3966del;4130_4162del
16 human 23187 PHLDB1 pleckstrin homology like do... XM_005271468.3 7% 7% 1_3978del;4142_4174del
17 human 23187 PHLDB1 pleckstrin homology like do... XM_006718800.3 6.9% 6.9% 1_4062del
18 human 23187 PHLDB1 pleckstrin homology like do... XM_006718799.3 6.8% 6.8% 1_4062del;4226_4258del
19 human 23187 PHLDB1 pleckstrin homology like do... XM_006718798.3 6.8% 6.8% 1_4107del;4271_4303del
20 human 23187 PHLDB1 pleckstrin homology like do... XM_017017410.1 6.7% 6.7% 1_4149del;4313_4345del
21 human 23187 PHLDB1 pleckstrin homology like do... XM_017017409.1 6.7% 6.7% 1_4206del
22 human 23187 PHLDB1 pleckstrin homology like do... XM_017017408.1 6.6% 6.6% 1_4233del
23 human 23187 PHLDB1 pleckstrin homology like do... XM_011542710.2 6.6% 6.6% 1_4251del;4415_4447del
24 human 23187 PHLDB1 pleckstrin homology like do... XM_006718797.3 6.5% 6.5% 1_4278del;4442_4474del
25 human 23187 PHLDB1 pleckstrin homology like do... XM_006718796.4 6.5% 6.5% 1_4281del;4445_4477del
26 human 23187 PHLDB1 pleckstrin homology like do... XM_011542708.3 6.5% 6.5% 1_4284del;4448_4480del
27 human 23187 PHLDB1 pleckstrin homology like do... XM_011542709.2 6.5% 6.5% 1_4284del;4448_4480del
28 human 23187 PHLDB1 pleckstrin homology like do... XM_017017407.1 6.5% 6.5% 1_4290del;4454_4486del
29 human 23187 PHLDB1 pleckstrin homology like do... XM_011542707.2 6.5% 6.5% 1_4293del;4457_4489del
30 human 23187 PHLDB1 pleckstrin homology like do... XM_011542706.2 6.4% 6.4% 1_4377del
31 human 23187 PHLDB1 pleckstrin homology like do... XM_011542705.2 6.4% 6.4% 1_4377del;4541_4573del
32 human 23187 PHLDB1 pleckstrin homology like do... XM_011542704.2 6.4% 6.4% 1_4422del
33 human 23187 PHLDB1 pleckstrin homology like do... XM_005277680.3 6.3% 6.3% 1_4419del;4583_4615del
34 human 23187 PHLDB1 pleckstrin homology like do... XM_011542703.2 6.3% 6.3% 1_4422del;4586_4618del
35 human 23187 PHLDB1 pleckstrin homology like do... XR_947813.2 4% (many diffs)
36 human 23187 PHLDB1 pleckstrin homology like do... XR_001747797.1 4% (many diffs)
37 mouse 102693 Phldb1 pleckstrin homology like do... XM_006509933.3 13.6% 14.7% (many diffs)
38 mouse 102693 Phldb1 pleckstrin homology like do... XM_017313091.2 10.7% 11.5% (many diffs)
39 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243983.1 7.7% 8.3% (many diffs)
40 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243982.1 7.3% 8% (many diffs)
41 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243981.1 7.2% 7.8% (many diffs)
42 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243980.1 7.1% 7.7% (many diffs)
43 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243978.1 7% 7.6% (many diffs)
44 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243976.1 6.9% 7.5% (many diffs)
45 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243975.1 6.8% 7.4% (many diffs)
46 mouse 102693 Phldb1 pleckstrin homology like do... NM_153537.4 6.8% 7.3% (many diffs)
47 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243974.1 6.7% 7.3% (many diffs)
48 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243979.1 6.7% 7.2% (many diffs)
49 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243973.1 6.7% 7.2% (many diffs)
50 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243972.1 6.6% 7.1% (many diffs)
51 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243971.1 6.6% 7.1% (many diffs)
52 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243970.1 6.6% 7.1% (many diffs)
53 mouse 102693 Phldb1 pleckstrin homology like do... XM_006509928.4 6.5% 7% (many diffs)
54 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243977.1 6.5% 7% (many diffs)
55 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243969.1 6.4% 7% (many diffs)
56 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243968.1 6.4% 6.9% (many diffs)
57 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243967.1 6.4% 6.9% (many diffs)
58 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243966.1 6.3% 6.8% (many diffs)
59 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243965.1 6.3% 6.8% (many diffs)
60 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243964.1 6.2% 6.8% (many diffs)
61 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243963.1 6.2% 6.7% (many diffs)
62 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243962.1 6.1% 6.7% (many diffs)
63 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243961.1 6.1% 6.6% (many diffs)
64 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243960.1 6.1% 6.6% (many diffs)
65 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243957.1 6.1% 6.6% (many diffs)
66 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243958.1 6.1% 6.6% (many diffs)
67 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243956.1 6% 6.5% (many diffs)
68 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243955.1 6% 6.5% (many diffs)
69 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243953.1 6% 6.5% (many diffs)
70 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243954.1 6% 6.5% (many diffs)
71 mouse 102693 Phldb1 pleckstrin homology like do... XM_006509907.3 6% 6.4% (many diffs)
72 mouse 102693 Phldb1 pleckstrin homology like do... XM_006509916.3 6% 6.4% (many diffs)
73 mouse 102693 Phldb1 pleckstrin homology like do... XM_006509919.4 6% 6.4% (many diffs)
74 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243959.1 4.3% 3.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
164
ORF end:
467
ORF length:
303
Sequence:
1CCAGCTTGGC ACTTGATGTA ATTCTCCTTG GAATTTGCCC TTTTTGAGTT TGGATCTTGG
61TTCATTCTCA AGCCTCAGAC AGTGGTTCAA AGTTTTTTTC TTCCATTTCA GGTGTCGTGA
121GGCTAGCATC GATTGATCAA CAAGTTTGTA CAAAAAAGTT GGCATGGGCG GCAAGATTAA
181ATCATGGAAG AAGCGCTGGT TTGTCTTCGA CCGGCTCAAG CGCACCCTTT CCTATTATGT
241GGACAAGCAT GAGACGAAGC TGAAGGGAGT CATCTATTTC CAGGCCATTG AGGAAGTGTA
301CTACGACCAC CTGCGCAGTG CAGCCAAGAG CCCGAACCCA GCCCTCACCT TCTGCGTAAA
361GACCCATGAC CGGCTGTACT ACATGGTGGC CCCATCTGCA GAGGCCATGC GTATCTGGAT
421GGATGTCATT GTCACAGGGG CTGAGGGCTA CACTCAGTTC ATGAACTACC CAACTTTCTT
481GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC
541GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG
601TGGAAAGGAC GATCAATCCT GAGCTGCAGG CAATGAACGC GTTAAGTCga caatcaacct
661ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)