Construct: ORF TRCN0000473611
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001278.1_s317c1
- Derived from:
- ccsbBroadEn_11690
- DNA Barcode:
- TCAATCCTGAGCTGCAGGCAATGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PHLDB1 (23187)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473611
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542715.3 | 14% | 14% | 1_1860del |
2 | human | 23187 | PHLDB1 | pleckstrin homology like do... | NM_001144759.3 | 7.6% | 7.6% | 1_3654del |
3 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271474.5 | 7.5% | 7.5% | 1_3720del |
4 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271473.3 | 7.3% | 7.3% | 1_3792del;3956_3988del |
5 | human | 23187 | PHLDB1 | pleckstrin homology like do... | NM_001144758.3 | 7.3% | 7.3% | 1_3795del;3959_3991del |
6 | human | 23187 | PHLDB1 | pleckstrin homology like do... | NM_015157.4 | 7.3% | 7.3% | 1_3795del;3959_3991del |
7 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271472.3 | 7.2% | 7.2% | 1_3837del;4001_4033del |
8 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718803.3 | 7.1% | 7.1% | 1_3921del |
9 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271471.3 | 7.1% | 7.1% | 1_3933del |
10 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718802.3 | 7.1% | 7.1% | 1_3921del;4085_4117del |
11 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542713.2 | 7.1% | 7.1% | 1_3921del;4085_4117del |
12 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542711.2 | 7.1% | 7.1% | 1_3924del;4088_4120del |
13 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271470.3 | 7% | 7% | 1_3933del;4097_4129del |
14 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271469.3 | 7% | 7% | 1_3978del |
15 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718801.3 | 7% | 7% | 1_3966del;4130_4162del |
16 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271468.3 | 7% | 7% | 1_3978del;4142_4174del |
17 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718800.3 | 6.9% | 6.9% | 1_4062del |
18 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718799.3 | 6.8% | 6.8% | 1_4062del;4226_4258del |
19 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718798.3 | 6.8% | 6.8% | 1_4107del;4271_4303del |
20 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_017017410.1 | 6.7% | 6.7% | 1_4149del;4313_4345del |
21 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_017017409.1 | 6.7% | 6.7% | 1_4206del |
22 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_017017408.1 | 6.6% | 6.6% | 1_4233del |
23 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542710.2 | 6.6% | 6.6% | 1_4251del;4415_4447del |
24 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718797.3 | 6.5% | 6.5% | 1_4278del;4442_4474del |
25 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718796.4 | 6.5% | 6.5% | 1_4281del;4445_4477del |
26 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542708.3 | 6.5% | 6.5% | 1_4284del;4448_4480del |
27 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542709.2 | 6.5% | 6.5% | 1_4284del;4448_4480del |
28 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_017017407.1 | 6.5% | 6.5% | 1_4290del;4454_4486del |
29 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542707.2 | 6.5% | 6.5% | 1_4293del;4457_4489del |
30 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542706.2 | 6.4% | 6.4% | 1_4377del |
31 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542705.2 | 6.4% | 6.4% | 1_4377del;4541_4573del |
32 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542704.2 | 6.4% | 6.4% | 1_4422del |
33 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005277680.3 | 6.3% | 6.3% | 1_4419del;4583_4615del |
34 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542703.2 | 6.3% | 6.3% | 1_4422del;4586_4618del |
35 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XR_947813.2 | 4% | (many diffs) | |
36 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XR_001747797.1 | 4% | (many diffs) | |
37 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_006509933.3 | 13.6% | 14.7% | (many diffs) |
38 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_017313091.2 | 10.7% | 11.5% | (many diffs) |
39 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243983.1 | 7.7% | 8.3% | (many diffs) |
40 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243982.1 | 7.3% | 8% | (many diffs) |
41 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243981.1 | 7.2% | 7.8% | (many diffs) |
42 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243980.1 | 7.1% | 7.7% | (many diffs) |
43 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243978.1 | 7% | 7.6% | (many diffs) |
44 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243976.1 | 6.9% | 7.5% | (many diffs) |
45 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243975.1 | 6.8% | 7.4% | (many diffs) |
46 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | NM_153537.4 | 6.8% | 7.3% | (many diffs) |
47 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243974.1 | 6.7% | 7.3% | (many diffs) |
48 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243979.1 | 6.7% | 7.2% | (many diffs) |
49 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243973.1 | 6.7% | 7.2% | (many diffs) |
50 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243972.1 | 6.6% | 7.1% | (many diffs) |
51 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243971.1 | 6.6% | 7.1% | (many diffs) |
52 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243970.1 | 6.6% | 7.1% | (many diffs) |
53 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_006509928.4 | 6.5% | 7% | (many diffs) |
54 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243977.1 | 6.5% | 7% | (many diffs) |
55 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243969.1 | 6.4% | 7% | (many diffs) |
56 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243968.1 | 6.4% | 6.9% | (many diffs) |
57 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243967.1 | 6.4% | 6.9% | (many diffs) |
58 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243966.1 | 6.3% | 6.8% | (many diffs) |
59 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243965.1 | 6.3% | 6.8% | (many diffs) |
60 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243964.1 | 6.2% | 6.8% | (many diffs) |
61 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243963.1 | 6.2% | 6.7% | (many diffs) |
62 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243962.1 | 6.1% | 6.7% | (many diffs) |
63 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243961.1 | 6.1% | 6.6% | (many diffs) |
64 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243960.1 | 6.1% | 6.6% | (many diffs) |
65 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243957.1 | 6.1% | 6.6% | (many diffs) |
66 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243958.1 | 6.1% | 6.6% | (many diffs) |
67 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243956.1 | 6% | 6.5% | (many diffs) |
68 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243955.1 | 6% | 6.5% | (many diffs) |
69 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243953.1 | 6% | 6.5% | (many diffs) |
70 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243954.1 | 6% | 6.5% | (many diffs) |
71 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_006509907.3 | 6% | 6.4% | (many diffs) |
72 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_006509916.3 | 6% | 6.4% | (many diffs) |
73 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_006509919.4 | 6% | 6.4% | (many diffs) |
74 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243959.1 | 4.3% | 3.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 164
- ORF end:
- 467
- ORF length:
- 303
- Sequence:
-
1 CCAGCTTGGC ACTTGATGTA ATTCTCCTTG GAATTTGCCC TTTTTGAGTT TGGATCTTGG 61 TTCATTCTCA AGCCTCAGAC AGTGGTTCAA AGTTTTTTTC TTCCATTTCA GGTGTCGTGA 121 GGCTAGCATC GATTGATCAA CAAGTTTGTA CAAAAAAGTT GGCATGGGCG GCAAGATTAA 181 ATCATGGAAG AAGCGCTGGT TTGTCTTCGA CCGGCTCAAG CGCACCCTTT CCTATTATGT 241 GGACAAGCAT GAGACGAAGC TGAAGGGAGT CATCTATTTC CAGGCCATTG AGGAAGTGTA 301 CTACGACCAC CTGCGCAGTG CAGCCAAGAG CCCGAACCCA GCCCTCACCT TCTGCGTAAA 361 GACCCATGAC CGGCTGTACT ACATGGTGGC CCCATCTGCA GAGGCCATGC GTATCTGGAT 421 GGATGTCATT GTCACAGGGG CTGAGGGCTA CACTCAGTTC ATGAACTACC CAACTTTCTT 481 GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC 541 GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG 601 TGGAAAGGAC GATCAATCCT GAGCTGCAGG CAATGAACGC GTTAAGTCga caatcaacct 661 ctggattaca aaatttgtga aagatt