Construct: ORF TRCN0000473728
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009852.1_s317c1
- Derived from:
- ccsbBroadEn_03289
- DNA Barcode:
- ATTGCACAACAAGCTCGTGCAGCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CHST15 (51363)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473728
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51363 | CHST15 | carbohydrate sulfotransfera... | NM_001270764.2 | 100% | 100% | |
| 2 | human | 51363 | CHST15 | carbohydrate sulfotransfera... | NM_015892.5 | 100% | 100% | |
| 3 | human | 51363 | CHST15 | carbohydrate sulfotransfera... | XM_005269891.3 | 100% | 100% | |
| 4 | human | 51363 | CHST15 | carbohydrate sulfotransfera... | XM_006717891.4 | 100% | 100% | |
| 5 | human | 51363 | CHST15 | carbohydrate sulfotransfera... | XM_017016319.1 | 100% | 100% | |
| 6 | human | 51363 | CHST15 | carbohydrate sulfotransfera... | XM_005269892.4 | 90.4% | 89.8% | (many diffs) |
| 7 | human | 51363 | CHST15 | carbohydrate sulfotransfera... | XM_017016320.1 | 90.4% | 89.8% | (many diffs) |
| 8 | human | 51363 | CHST15 | carbohydrate sulfotransfera... | XM_005269893.3 | 89.8% | 88.6% | (many diffs) |
| 9 | human | 51363 | CHST15 | carbohydrate sulfotransfera... | XM_017016321.1 | 89.8% | 88.6% | (many diffs) |
| 10 | human | 51363 | CHST15 | carbohydrate sulfotransfera... | XM_005269894.5 | 88.9% | 88.9% | 1496_1499delATTTinsGGC;1503_1503delCins182 |
| 11 | human | 51363 | CHST15 | carbohydrate sulfotransfera... | NM_001270765.2 | 85.8% | 78.5% | (many diffs) |
| 12 | human | 51363 | CHST15 | carbohydrate sulfotransfera... | NM_014863.4 | 85.8% | 78.5% | (many diffs) |
| 13 | human | 51363 | CHST15 | carbohydrate sulfotransfera... | XM_011539857.1 | 69% | 59.7% | (many diffs) |
| 14 | mouse | 77590 | Chst15 | carbohydrate (N-acetylgalac... | NM_029935.5 | 86.4% | 92.5% | (many diffs) |
| 15 | mouse | 77590 | Chst15 | carbohydrate (N-acetylgalac... | XM_006508332.1 | 86.4% | 92.5% | (many diffs) |
| 16 | mouse | 77590 | Chst15 | carbohydrate (N-acetylgalac... | XM_006508333.3 | 86.4% | 92.5% | (many diffs) |
| 17 | mouse | 77590 | Chst15 | carbohydrate (N-acetylgalac... | XM_017312386.1 | 86.4% | 92.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1749
- ORF length:
- 1683
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgag gcactgcatt aattgctgca tacagctgtt acccgacggc gcacacaagc 121 agcaggtcaa ctgccaaggg ggcccccatc acggtcacca ggcgtgcccc acgtgcaaag 181 gagaaaacaa aattctgttt cgtgtggaca gtaagcagat gaacttgctt gctgttctcg 241 aagtgaggac tgaagggaac gaaaactggg gtgggttttt gcgcttcaaa aaggggaagc 301 gatgtagcct cgtttttgga ctgataataa tgaccttggt aatggcttct tacatccttt 361 ctggggccca ccaagagctt ctgatctcat cacctttcca ttacggaggc ttccccagca 421 accccagctt gatggacagc gaaaacccaa gtgacacaaa ggagcatcac caccaatcct 481 ctgtaaataa tatttcatac atgaaggact atccaagcat taaattaatt atcaacagca 541 tcacaactag gattgagttc acgaccagac agctcccaga cttagaagac cttaagaagc 601 aggagttgca tatgttttca gtcatcccca acaaattcct tccaaacagt aagagcccct 661 gttggtacga ggagttctcg gggcagaaca ccaccgaccc ctacctcacc aactcctacg 721 tgctctactc caagcgcttc cgctccacct tcgacgccct gcgcaaggcc ttctggggcc 781 acctggcgca cgcgcacggg aagcacttcc gcctgcgctg cctgccgcac ttctacatca 841 tagggcagcc caagtgcggg accacagacc tctatgaccg cctgcggctg caccctgagg 901 tcaagttctc cgccatcaag gagccacact ggtggacccg gaagcgcttt ggaatcgtcc 961 gcctaagaga tgggctgcga gaccgctatc ccgtggaaga ttatctggac ctctttgacc 1021 tggccgcaca ccagatccat caaggactgc aggccagctc tgcaaaggag cagagcaaga 1081 tgaatacaat cattatcggg gaggccagtg cctccacgat gtgggataat aatgcctgga 1141 cgttcttcta cgacaacagc acggatggcg agccaccgtt tctgacgcag gacttcatcc 1201 acgcctttca gccaaatgcc agactgattg tcatgctcag ggaccctgtg gagaggttgt 1261 actcagacta tctctacttt gcaagttcga ataaaTCCGC GGACGACTTC CATGAGAAAG 1321 TGACAGAAGC ACTGCAGCTG TTTGAAAATT GCATGCTTGA TTATTCACTG CGCGCCTGCG 1381 TCTACAACAA CACCCTCAAC AACGCCATGC CTGTGAGGCT CCAGGTTGGG CTCTATGCTG 1441 TGTACCTTCT GGACTGGCTC AGCGTTTTTG ACAAGCAACA GTTTCTCATT CTTCGCCTGG 1501 AAGATCATGC ATCCAACGTC AAGTACACCA TGCACAAGGT CTTCCAGTTT CTGAACCTAG 1561 GGCCCTTAAG TGAGAAGCAG GAGGCTTTGA TGACCAAGAG CCCCGCATCC AATGCACGGC 1621 GTCCCGAGGA CCGGAACCTG GGGCCCATGT GGCCCATCAC ACAGAAGATT CTGCGGGATT 1681 TCTACAGGCC CTTCAACGCT AGGCTGGCGC AGGTCCTCGC GGATGAGGCG TTTGCGTGGA 1741 AGACGACGTG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 1801 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 1861 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAATTGCA CAACAAGCTC GTGCAGCCAC 1921 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt