Construct: ORF TRCN0000474049
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002144.1_s317c1
- Derived from:
- ccsbBroadEn_02054
- DNA Barcode:
- ACGAGTAGAGTAGCATGTAAGCCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- H3C7 (8968)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000474049
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8968 | H3C7 | H3 clustered histone 7 | NM_021018.2 | 100% | 100% | |
| 2 | human | 8351 | H3C4 | H3 clustered histone 4 | NM_003530.4 | 87.7% | 100% | (many diffs) |
| 3 | human | 8357 | H3C10 | H3 clustered histone 10 | NM_003536.2 | 87.2% | 100% | (many diffs) |
| 4 | human | 8354 | H3C11 | H3 clustered histone 11 | NM_003533.2 | 87% | 100% | (many diffs) |
| 5 | human | 8355 | H3C8 | H3 clustered histone 8 | NM_003534.2 | 86.2% | 100% | (many diffs) |
| 6 | human | 8350 | H3C1 | H3 clustered histone 1 | NM_003529.2 | 85.7% | 100% | (many diffs) |
| 7 | human | 333932 | H3C15 | H3 clustered histone 15 | NM_001005464.2 | 85.7% | 99.2% | (many diffs) |
| 8 | human | 126961 | H3C14 | H3 clustered histone 14 | NM_021059.2 | 85.7% | 99.2% | (many diffs) |
| 9 | human | 8356 | H3C12 | H3 clustered histone 12 | NM_003535.2 | 84.8% | 100% | (many diffs) |
| 10 | human | 653604 | H3C13 | H3 clustered histone 13 | NM_001123375.2 | 84.5% | 99.2% | (many diffs) |
| 11 | human | 8290 | H3-4 | H3.4 histone | NM_003493.2 | 84.5% | 97% | (many diffs) |
| 12 | human | 8353 | H3C6 | H3 clustered histone 6 | NM_003532.2 | 84.3% | 100% | (many diffs) |
| 13 | human | 440686 | H3-2 | H3.2 histone (putative) | NM_001355409.3 | 84.1% | 97% | (many diffs) |
| 14 | human | 440686 | H3-2 | H3.2 histone (putative) | NM_001372105.1 | 84.1% | 97% | (many diffs) |
| 15 | human | 8358 | H3C2 | H3 clustered histone 2 | NM_003537.3 | 84% | 100% | (many diffs) |
| 16 | human | 8352 | H3C3 | H3 clustered histone 3 | NM_003531.2 | 83% | 100% | (many diffs) |
| 17 | human | 3020 | H3-3A | H3.3 histone A | NM_002107.6 | 78.3% | 96.3% | (many diffs) |
| 18 | human | 440093 | H3-5 | H3.5 histone | NM_001013699.3 | 78.2% | 93.3% | (many diffs) |
| 19 | human | 3021 | H3-3B | H3.3 histone B | NM_005324.5 | 78% | 96.3% | (many diffs) |
| 20 | mouse | 319148 | Hist1h3c | histone cluster 1, H3c | NM_175653.2 | 87% | 99.2% | (many diffs) |
| 21 | mouse | 319153 | Hist1h3i | histone cluster 1, H3i | NM_178207.2 | 86.7% | 100% | (many diffs) |
| 22 | mouse | 319152 | Hist1h3h | histone cluster 1, H3h | NM_178206.2 | 86.5% | 100% | (many diffs) |
| 23 | mouse | 319150 | Hist1h3b | histone cluster 1, H3b | NM_178203.2 | 86.5% | 99.2% | (many diffs) |
| 24 | mouse | 97908 | Hist1h3g | histone cluster 1, H3g | NM_145073.2 | 86.2% | 100% | (many diffs) |
| 25 | mouse | 319149 | Hist1h3d | histone cluster 1, H3d | NM_178204.2 | 86.2% | 99.2% | (many diffs) |
| 26 | mouse | 360198 | Hist1h3a | histone cluster 1, H3a | NM_013550.5 | 85.7% | 100% | (many diffs) |
| 27 | mouse | 260423 | Hist1h3f | histone cluster 1, H3f | NM_013548.4 | 85.7% | 99.2% | (many diffs) |
| 28 | mouse | 319151 | Hist1h3e | histone cluster 1, H3e | NM_178205.2 | 85.7% | 99.2% | (many diffs) |
| 29 | mouse | 97114 | Hist2h3c2 | histone cluster 2, H3c2 | NM_054045.4 | 85.2% | 99.2% | (many diffs) |
| 30 | mouse | 319154 | Hist2h3b | histone cluster 2, H3b | NM_178215.2 | 85.2% | 99.2% | (many diffs) |
| 31 | mouse | 15077 | Hist2h3c1 | histone cluster 2, H3c1 | NM_178216.3 | 85.2% | 99.2% | (many diffs) |
| 32 | mouse | 382523 | Gm12260 | predicted gene 12260 | NM_001318003.2 | 85% | 97.7% | (many diffs) |
| 33 | mouse | 15081 | H3f3b | H3 histone, family 3B | NM_008211.3 | 78% | 96.3% | (many diffs) |
| 34 | mouse | 15081 | H3f3b | H3 histone, family 3B | XM_006532248.2 | 78% | 96.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 474
- ORF length:
- 408
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc acgcacgaag caaacagctc GTAAGTCCAC TGGCGGCAAA GCCCCGCGCA 121 AGCAGCTGGC CACTAAGGCG GCTCGCAAAA GCGCGCCAGC CACCGGTGGC GTGAAGAAGC 181 CCCACCGCTA CAGGCCTGGT ACTGTCGCCC TCCGTGAAAT CCGCCGCTAT CAGAAATCGA 241 CTGAGCTACT GATTCGCAAG CTACCATTCC AGCGTCTGGT ACGTGAGATC GCGCAGGACT 301 TCAAGACCGA CCTGCGCTTC CAGAGCTCGG CTGTGATGGC GCTGCAGGAG GCCTGCGAGG 361 CTTACCTGGT GGGGCTCTTT GAGGACACCA ACCTGTGTGC TATCCACGCC AAGCGAGTGA 421 CTATCATGCC CAAGGACATC CAGCTCGCTC GCCGCATTCG CGGAGAGAGG GCATACCCAA 481 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 541 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 601 TATCTTGTGG AAAGGACGAA CGAGTAGAGT AGCATGTAAG CCTACGCGTT AAGTCgacaa 661 tcaacctctg gattacaaaa tttgtgaaag att