Construct: ORF TRCN0000474153

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015943.1_s317c1
Derived from:
ccsbBroadEn_11575
DNA Barcode:
TCGCATTATGGCTAGCACCCCGAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ACOT2 (10965)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474153
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 641371 ACOT1 acyl-CoA thioesterase 1 NM_001037161.2 98.9% 98.8% (many diffs)
2 human 10965 ACOT2 acyl-CoA thioesterase 2 NM_006821.5 87% 86.7% 1_186del;983A>G;1424A>G
3 human 641371 ACOT1 acyl-CoA thioesterase 1 XM_017021590.1 68.4% 65.1% (many diffs)
4 human 10965 ACOT2 acyl-CoA thioesterase 2 NM_001364177.1 66.8% 64.6% (many diffs)
5 human 641371 ACOT1 acyl-CoA thioesterase 1 XM_017021589.1 65.9% 64.3% (many diffs)
6 human 641371 ACOT1 acyl-CoA thioesterase 1 XM_017021591.1 61.1% 61% (many diffs)
7 human 641371 ACOT1 acyl-CoA thioesterase 1 XM_017021592.1 61.1% 61% (many diffs)
8 human 10965 ACOT2 acyl-CoA thioesterase 2 NR_046028.1 60.4% (many diffs)
9 human 10965 ACOT2 acyl-CoA thioesterase 2 NM_001364178.1 49.1% 46.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1329
ORF length:
1263
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ggcgacgctg atcctggagc ctgcgggccg ctgctgctgg gacgaaccgg
121tgcgaatcgc cgtgcgcggc ctagccccgg agcagccggt cacgctgcgc gcgtccctgc
181gcgacgagaa gggcgcgctt ttccaggccc acgcgcgcta ccgcgccgac actcttggcg
241agctggacct ggagcgcgcg cccgcgctgg gcggcagctt cgcggggctt gagcccatgg
301ggctgctctg ggccttggag cccgagaaac ctttggtgcg gctggtgaag cgcgacgtgc
361gaacgccctt ggccgtggag ctggaggtgc tggatggcca cgaccccgac cccgggcggc
421tgctgtgcca gacgcggcac gagcgctact tcctcccgcc cggggtgcgg cgcgagccgg
481tgcgcgtggg ccgggtgcga ggcacgctct tcctgccgcc agaacctggg ccctttcctg
541ggattgtgga catgttcgga actggaggtg gcctgctgga gtatcgggct agtctgctgg
601ctgggaaggg ttttgctgtg atggctctgg cttattataa ctatgaagac ctccccaaga
661ccatggagac gctccatctg gagtactttg aagaagccat gaactacttg ctcagtcatc
721ccgaggtaaa aggtccagga gttgggctgc ttggaatttc caaagggggt gagctctgcc
781tttccatggc ctctttcctg aagggcatca cggctgctgt cgtcatcaac ggctctgtgg
841ccaatgttgg gggaacctta cgctacaagg gcgagaccct gccccctgtg ggcgtcaaca
901gaaatcgcat caaggtgacc aaagatggct atgcagacat tgtggatgtc ctgaacagcc
961ctttGGAAGG ACCTGACCAG AAGAGCTTCA TTCCTGTGGA AAGGGCAGAG AGCACCTTCC
1021TGTTCCTGGT AGGTCAGGAT GACCACAACT GGAAGAGTGA GTTCTATGCT AATGAGGCCT
1081GTAAACGCTT GCAGGCCCAT GGGAGGAGAA AGCCCCAGAT CATCTGTTAC CCAGAGACAG
1141GGCACTATAT TGAGCCTCCT TACTTCCCCC TGTGTCGGGC TTCCCTGCAT GCCTTGGTGG
1201GCAGTCCTAT TATCTGGGGA GGGGAGCCCA GGGCTCATGC CATGGCTCAG GTGGATGCTT
1261GGAAACAACT CCAGACTTTC TTCCACAAAC ACTTGGGTGG CCGCGAGGGG ACAATCCCAT
1321CAAAAGTGTA CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1381CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1441TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGATCGCAT TATGGCTAGC ACCCCGAGAC
1501GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)