Construct: ORF TRCN0000474512

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008143.1_s317c1
Derived from:
ccsbBroadEn_12545
DNA Barcode:
GGGAGGGCCCAAAGGTCCATTTTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRIM48 (79097)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474512
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79097 TRIM48 tripartite motif containing 48 NM_024114.5 92.7% 92.8% 1_48del;468T>G
2 human 642612 TRIM49C tripartite motif containing... XM_017018126.1 51.7% 48% (many diffs)
3 human 57093 TRIM49 tripartite motif containing 49 XM_017018027.2 51.6% 48% (many diffs)
4 human 283116 TRIM49B tripartite motif containing... XM_017017561.1 51.4% 47.7% (many diffs)
5 human 729384 TRIM49D2 tripartite motif containing... NM_001105522.1 45% 43.5% (many diffs)
6 human 399939 TRIM49D1 tripartite motif containing... NM_001206627.1 45% 43.5% (many diffs)
7 human 399939 TRIM49D1 tripartite motif containing... XM_011542816.3 45% 43.5% (many diffs)
8 human 642612 TRIM49C tripartite motif containing... NM_001195234.1 42.9% 39.8% (many diffs)
9 human 57093 TRIM49 tripartite motif containing 49 NM_020358.2 42.8% 39.8% (many diffs)
10 human 642612 TRIM49C tripartite motif containing... XM_024448656.1 42.7% 38.1% (many diffs)
11 human 283116 TRIM49B tripartite motif containing... NM_001206626.1 42.6% 39.6% (many diffs)
12 human 57093 TRIM49 tripartite motif containing 49 XM_024448617.1 42.6% 38.1% (many diffs)
13 human 84767 TRIM51 tripartite motif-containing 51 NM_032681.4 40.5% 34.7% (many diffs)
14 human 642569 TRIM53AP tripartite motif containing... NR_028346.1 34.1% (many diffs)
15 human 399940 TRIM51EP tripartite motif-containing... NR_146921.1 32.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
690
ORF length:
624
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa ttctggaatc tcgcaagtct tccagaggga actcacctgc cccatctgca
121tgaactactt catagacccg gtcaccatag actgtgggca cagcttttgc aggccctgtt
181tctaccTCAA CTGGCAAGAC ATCCCAATTC TTACTCAGTG CTTTGAATGC ATAAAGACAA
241TACAGCAGAG AAACCTCAAA ACTAACATTC GATTGAAGAA GATGGCTTCC CTTGCCAGAA
301AAGCCAGTCT CTGGCTATTC CTGAGCTCTG AGGAGCAAAT GTGTGGCATT CACAGGGAGA
361CAAAGAAGAT GTTCTGTGAA GTGGACAGGA GCCTGCTCTG TTTGCTGTGC TCCAGCTCTC
421AGGAGCACCG GTATCACAGA CACTGTCCCG CTGAGTGGGC TGCTGAGGAA CACTGGGAGA
481AGCTGTTAAA GAAAATGCAG TCTTTATGGG AAAAAGCTTG TGAAAATCAG AGAAACCTGA
541ATGTGGAAAC CACCAGAATC AGCCACTGGA AGGCTTTTGG AGACATATTA TACAGGAGTG
601AGTCCGTGCT GCTGCACATG CCCCAGCCTC TGAATCTAGC GCTCAGGGCA GGGCCCATCA
661CTGGACTGAG GGACAGGCTC AACCAATTCT GCCCAACTTT CTTGTACAAA GTGGTTGATA
721TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
781CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAGGGAG
841GGCCCAAAGG TCCATTTTAA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
901tgaaagatt

Download FASTA (ORF) (Full)