Construct: ORF TRCN0000475295
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015218.1_s317c1
- Derived from:
- ccsbBroadEn_11663
- DNA Barcode:
- AGTCTTGCGTGTCTGTGAATAAAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PDXDC1 (23042)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475295
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001285449.1 | 91.7% | 86% | (many diffs) |
| 2 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030209.2 | 91.7% | 86% | (many diffs) |
| 3 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001324020.1 | 91.5% | 85.8% | (many diffs) |
| 4 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_024450196.1 | 89.1% | 85.8% | (many diffs) |
| 5 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_017023065.1 | 88.8% | 83.3% | (many diffs) |
| 6 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_024450194.1 | 88.6% | 85.4% | (many diffs) |
| 7 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_024450195.1 | 88.3% | 82% | (many diffs) |
| 8 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_024452517.1 | 88.3% | 82% | (many diffs) |
| 9 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001324021.1 | 86.6% | 81.1% | (many diffs) |
| 10 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030210.2 | 86.6% | 81.1% | (many diffs) |
| 11 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_024450197.1 | 83.8% | 78.3% | (many diffs) |
| 12 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_024452518.1 | 83.8% | 78.3% | (many diffs) |
| 13 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030207.1 | 83.5% | 77.8% | (many diffs) |
| 14 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_024452516.1 | 83.2% | 79.6% | (many diffs) |
| 15 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001285450.2 | 79.2% | 78.3% | (many diffs) |
| 16 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030208.2 | 78.8% | 73.2% | (many diffs) |
| 17 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030205.2 | 72.4% | 72.4% | 1573_2169del |
| 18 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_017023063.1 | 70.4% | 70.4% | 0_1ins45;1528_2124del |
| 19 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030206.1 | 68.7% | 68.7% | 158_159ins81;1492_2088del |
| 20 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030204.1 | 67.5% | 67% | (many diffs) |
| 21 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_015027.4 | 66.4% | 66.4% | 1573_2364del |
| 22 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_006725225.2 | 66.4% | 66.4% | 1573_2364del |
| 23 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001324019.2 | 66.3% | 66.3% | 93_94insAGA;1570_2361del |
| 24 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_006725224.2 | 65.2% | 65.1% | (many diffs) |
| 25 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_017023060.1 | 65.2% | 65.1% | (many diffs) |
| 26 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030202.1 | 65% | 64.5% | (many diffs) |
| 27 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_005255173.1 | 64.7% | 64.1% | (many diffs) |
| 28 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_006725223.1 | 64.7% | 64.1% | (many diffs) |
| 29 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001285447.1 | 64.5% | 64.5% | 0_1ins45;1528_2319del |
| 30 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_005255176.3 | 64.5% | 64.5% | 0_1ins45;1528_2319del |
| 31 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_017023059.1 | 64.5% | 64.5% | 0_1ins45;1528_2319del |
| 32 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_017023061.2 | 64.5% | 64.5% | 0_1ins45;1528_2319del |
| 33 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_017023062.1 | 64.5% | 64.5% | 0_1ins45;1528_2319del |
| 34 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030203.2 | 64.5% | 64.5% | 0_1ins45;1528_2319del |
| 35 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_024452515.1 | 64.5% | 64.5% | 0_1ins45;1528_2319del |
| 36 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001285444.2 | 63% | 63% | 158_159ins81;1492_2283del |
| 37 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_006725228.2 | 63% | 63% | 158_159ins81;1492_2283del |
| 38 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001285445.2 | 62.9% | 62.9% | 93_94insAGA;155_156ins81;1489_2280del |
| 39 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030200.1 | 62.2% | 61.8% | (many diffs) |
| 40 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_006725226.2 | 61.4% | 60.7% | (many diffs) |
| 41 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_006720865.2 | 61.1% | 61.1% | 0_1ins45;113_114ins81;1447_2238del |
| 42 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_017023064.1 | 61.1% | 61.1% | 0_1ins45;113_114ins81;1447_2238del |
| 43 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030201.1 | 59% | 58.5% | (many diffs) |
| 44 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001285448.1 | 54.9% | 54.9% | 0_1ins45;113_114ins228;1300_2091del |
| 45 | human | 283970 | PDXDC2P-NPIPB14P | nuclear pore complex-intera... | NR_003610.1 | 34.7% | (many diffs) | |
| 46 | mouse | 94184 | Pdxdc1 | pyridoxal-dependent decarbo... | NM_001039533.2 | 64.5% | 68% | (many diffs) |
| 47 | mouse | 94184 | Pdxdc1 | pyridoxal-dependent decarbo... | NM_053181.3 | 58.2% | 61.3% | (many diffs) |
| 48 | mouse | 94184 | Pdxdc1 | pyridoxal-dependent decarbo... | NM_001291017.1 | 58% | 61.2% | (many diffs) |
| 49 | mouse | 94184 | Pdxdc1 | pyridoxal-dependent decarbo... | NM_001357225.1 | 57.9% | 61% | (many diffs) |
| 50 | mouse | 94184 | Pdxdc1 | pyridoxal-dependent decarbo... | XM_011246053.2 | 57.6% | 60.7% | (many diffs) |
| 51 | mouse | 94184 | Pdxdc1 | pyridoxal-dependent decarbo... | XM_011246054.3 | 57.5% | 60.6% | (many diffs) |
| 52 | mouse | 94184 | Pdxdc1 | pyridoxal-dependent decarbo... | XM_011246055.3 | 55.3% | 58.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1638
- ORF length:
- 1572
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga cgcgtccctg gagaagatag cagaccccac gttagctgaa atgggaaaaa 121 acttgaagga ggcagtgaag atgctggagg acagtcagag aagaacagaa gaggaaaatg 181 gaaagaagct catatccgga gatattccag gcccactcca gggcagtggg caagatatgg 241 tgagcatcct ccagttagtt cagaatctca tgcatggaga tgaagatgag gagccccaga 301 gccccagaat ccaaaatatt ggagaacaag gtcatatggc tttgttggga catagtctgg 361 gagcttatat ttcaactctg gacaaagaga agctgagaaa acttacaact aggatacttt 421 cagataccac cttatggcta tgcagaattt tcagatatga aaatgggtgt gcttatttcc 481 acgaagagga aagagaagga cttgcaaaga tatgtaggct tgccattcat tctcgatatg 541 aagacttcgt agtggatggc ttcaatgtgt tatataacaa gaagcctgtc atatatctta 601 gtgctgctgc tagacctggc ctgggccaat acctttgtaa tcagctcggc ttgcccttcc 661 cctgcttgtg ccgtgtaccc tgtaacactg tgtttggatc ccagcatcag atggatgttg 721 ccttcctgga gaaactgatt aaagatgata tagagcgagg aagactgccc ctgttgcttg 781 tcgcaaatgc aggaacggca gcagtaggac acacagacaa gattgggaga ttgaaagaac 841 tctgtgagca gtatggcata tggcttcatg tggagggtgt gaatctggca acattggctc 901 tgggttatgt ctcctcatca gtgctggctg cagccaaatg tgatagcatg acgatgactc 961 ctggcccgtg gctgggtttg ccagctgttc ctgcggtgac actgtataaa cacgatgacc 1021 ctgccttgac tttagttgct ggtcttacat caaataagcc cacagacaaa ctccgtgccc 1081 tgcctctgtg gttatcttta caatacttgg gacttgatgg gtttgtggag aggatcaagc 1141 atgcctgtca actgagtcaa cggttgcagg aaagtttgaa gaaagtgaat tacatcaaaa 1201 tcttggtgga agatgagctc agctccccag tggtggtgtt cagatttttc caggaattac 1261 caggcTCAGA TCCGGTGTTT AAAGCCGTCC CAGTGCCCAA CATGACACCT TCAGGAGTCG 1321 GCCGGGAGAG GCACTCGTGT GACGCGCTGA ATCGCTGGCT GGGAGAACAG CTGAAGCAGC 1381 TGGTGCCTGC AAGCGGCCTC ACAGTCATGG ATCTGGAAGC TGAGGGCACG TGTTTGCGGT 1441 TCAGCCCTTT GATGACCGCA GCAGTTTTAG GAACTCGGGG AGAGGATGTG GATCAGCTCG 1501 TAGCCTGCAT AGAAAGCAAA CTGCCAGTGC TGTGCTGTAC GCTCCAGTTG CGTGAAGAGT 1561 TCAAGCAGGA AGTGGAAGCA ACAGCAGGTC TCCTATATGT TGATGACCCT AACTGGTCTG 1621 GAATAGGGGT TGTCAGGTAC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 1681 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 1741 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAAGTCTTG CGTGTCTGTG 1801 AATAAATACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt