Construct: ORF TRCN0000475558

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004426.1_s317c1
Derived from:
ccsbBroadEn_08341
DNA Barcode:
CTTCCGAGTGTGCTTCCCCACTAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UPB1 (51733)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475558
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51733 UPB1 beta-ureidopropionase 1 NM_016327.3 99.9% 99.7% 1136C>T
2 human 51733 UPB1 beta-ureidopropionase 1 XM_011530222.2 93.3% 93.1% 365_445del;1217C>T
3 human 51733 UPB1 beta-ureidopropionase 1 XM_011530224.2 77.2% 77.1% 365_445del;954_955ins198;1019C>T
4 human 51733 UPB1 beta-ureidopropionase 1 XM_017028825.1 76% 71% (many diffs)
5 human 51733 UPB1 beta-ureidopropionase 1 XM_011530223.2 75.7% 71.6% (many diffs)
6 human 51733 UPB1 beta-ureidopropionase 1 XM_017028826.1 74.8% 74.6% (many diffs)
7 human 51733 UPB1 beta-ureidopropionase 1 XM_011530225.2 68.1% 67.9% 0_1ins366;770C>T
8 human 51733 UPB1 beta-ureidopropionase 1 XM_017028827.2 60.5% 49.1% 365_445del;700_701ins170;828_828delAins236
9 human 51733 UPB1 beta-ureidopropionase 1 XM_017028828.1 58% 48.1% (many diffs)
10 human 51733 UPB1 beta-ureidopropionase 1 XR_001755249.1 45.5% (many diffs)
11 human 51733 UPB1 beta-ureidopropionase 1 XR_937867.2 24.8% (many diffs)
12 mouse 103149 Upb1 ureidopropionase, beta NM_133995.4 81.9% 83.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1221
ORF length:
1152
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcgggcgct gagtggaagt cgctggagga atgcttggag aagcacctgc
121cgctccccga cttgcaggaa gtgaagcgcg ttctctatgg caaggaactc aggaagcttg
181atctgcccag ggaagctttc gaagctgcct ccagagaaga ctttgaactg cagggatatg
241cctttgaagc agcggaggag cagctgagac gaccccgcat tgtgcacgtg gggctggttc
301agaacagaat ccccctcccc gcaaatgccc ctgtggcaga acaggtctct gcccttcata
361gacgcataaa ggctatcgta gaggtggctg caatgtgtgg agtcaacatc atctgtttcc
421aggaagcatg gactatgccc tttgccttct gtacgagaga gaagcttcct tggacagaat
481ttgctgagtc agcagaggat gggcccacca ccagattctg tcagaagctg gcgaagaacc
541atgacatggt ggtggtgtct cccatcctgg aacgagacag cgagcatggg gatgttttgt
601ggaatacagc cgtggtgatc tccaattccg gagcagtcct gggaaagacc aggaaaaacc
661acatccccag agtgggtgat ttcaacgagt caacttacta catggaggga aacctgggcc
721accccgtgtt ccagacgcag ttcggaagga tcgcggtgaa catttgctac gggcggcacc
781accccctcaa ctggcttatg tacagcatca acggggctga gatcatcttc aacccctcgg
841ccacgatagg agcactcagc gagtccctgt ggcccatcga ggccagaaac gcagccattg
901ccaatcactg cttcaccTGC GCCATCAATC GAGTGGGCAC CGAGCACTTC CCGAACGAGT
961TTACCTCGGG AGATGGAAAG AAAGCTCACC AGGACTTTGG CTACTTTTAT GGCTCGAGCT
1021ATGTGGCAGC CCCTGACAGC AGCCGGACTC CTGGGCTGTC CCGTAGCCGG GATGGACTGC
1081TAGTTGCTAA GCTCGACCTA AACCTCTGCC AGCAGGTGAA TGATGTCTGG AACTTCAAGA
1141TGACGGGCAG GTATGAGATG TACGCACGGG AGCTCGCCGA AGCTGTCAAG TCCAACTACA
1201GCCTCACCAT CGTGAAAGAG TTGCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
1261CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1321AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGACTTC CGAGTGTGCT
1381TCCCCACTAG ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)