Construct: ORF TRCN0000475599

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004312.1_s317c1
Derived from:
ccsbBroadEn_13645
DNA Barcode:
CTACCGATTGCATGCTTACATGGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
POTEC (388468)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475599
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 102724631 POTEB3 POTE ankyrin domain family ... XM_011543795.2 98.2% 97.1% (many diffs)
2 human 102724631 POTEB3 POTE ankyrin domain family ... XM_006720358.2 97% 94.7% (many diffs)
3 human 102724631 POTEB3 POTE ankyrin domain family ... XM_011543797.2 96.9% 95.8% (many diffs)
4 human 102723502 LOC102723502 POTE ankyrin domain family ... XM_006724901.3 96.7% 94.5% (many diffs)
5 human 100288966 LOC100288966 POTE ankyrin domain family ... XM_006709930.3 96.7% 92.9% (many diffs)
6 human 317754 POTED POTE ankyrin domain family ... XM_006723997.3 96.7% 92.9% (many diffs)
7 human 102724631 POTEB3 POTE ankyrin domain family ... XM_011543796.2 96.7% 95.5% (many diffs)
8 human 102723502 LOC102723502 POTE ankyrin domain family ... XM_011546200.2 96.6% 95.5% (many diffs)
9 human 100288966 LOC100288966 POTE ankyrin domain family ... XM_011545656.2 96.6% 93.9% (many diffs)
10 human 102723502 LOC102723502 POTE ankyrin domain family ... XM_011546199.2 96.5% 95.2% (many diffs)
11 human 317754 POTED POTE ankyrin domain family ... XM_011529550.2 96.5% 93.7% (many diffs)
12 human 100288966 LOC100288966 POTE ankyrin domain family ... XM_011545655.2 96.5% 93.7% (many diffs)
13 human 100287399 POTEB2 POTE ankyrin domain family ... XM_006720354.3 87.4% 85.1% (many diffs)
14 human 100996331 POTEB POTE ankyrin domain family ... XM_006720355.3 87.4% 85.1% (many diffs)
15 human 100287399 POTEB2 POTE ankyrin domain family ... XM_017021853.1 87.2% 86% (many diffs)
16 human 100996331 POTEB POTE ankyrin domain family ... XM_017021858.1 87.2% 86% (many diffs)
17 human 100287399 POTEB2 POTE ankyrin domain family ... XM_011543793.2 87% 85.8% (many diffs)
18 human 100996331 POTEB POTE ankyrin domain family ... XM_011543794.2 87% 85.8% (many diffs)
19 human 340441 POTEA POTE ankyrin domain family ... XM_011544516.1 70.7% 62.5% (many diffs)
20 human 388468 POTEC POTE ankyrin domain family ... NM_001137671.1 69.8% 69% (many diffs)
21 human 404785 POTEG POTE ankyrin domain family ... NM_001005356.3 69.4% 66.1% (many diffs)
22 human 641455 POTEM POTE ankyrin domain family ... NM_001145442.1 69.2% 65.9% (many diffs)
23 human 23784 POTEH POTE ankyrin domain family ... NM_001136213.1 64.8% 61.8% (many diffs)
24 human 102724631 POTEB3 POTE ankyrin domain family ... NM_207355.3 64.1% 62.9% (many diffs)
25 human 102723502 LOC102723502 POTE ankyrin domain family ... XM_006724900.4 63.9% 62.8% (many diffs)
26 human 100288966 LOC100288966 POTE ankyrin domain family ... NM_001257362.2 63.6% 61.4% (many diffs)
27 human 317754 POTED POTE ankyrin domain family ... NM_174981.3 63.6% 61.4% (many diffs)
28 human 100287399 POTEB2 POTE ankyrin domain family ... NM_001277303.1 57.7% 56.6% (many diffs)
29 human 100996331 POTEB POTE ankyrin domain family ... NM_001277304.1 57.7% 56.6% (many diffs)
30 human 102724631 POTEB3 POTE ankyrin domain family ... NR_110752.1 55.8% (many diffs)
31 human 404785 POTEG POTE ankyrin domain family ... NR_027480.1 53.6% (many diffs)
32 human 100287399 POTEB2 POTE ankyrin domain family ... NR_102390.1 50.4% (many diffs)
33 human 100996331 POTEB POTE ankyrin domain family ... NR_102391.1 50.4% (many diffs)
34 human 340441 POTEA POTE ankyrin domain family ... NM_001005365.2 47.4% 42.3% (many diffs)
35 human 340441 POTEA POTE ankyrin domain family ... XM_024447146.1 42.8% 38.2% (many diffs)
36 human 445582 POTEE POTE ankyrin domain family ... XM_011511216.2 36.7% 35.6% (many diffs)
37 human 445582 POTEE POTE ankyrin domain family ... XM_017004159.2 36.4% 35.2% (many diffs)
38 human 653269 POTEI POTE ankyrin domain family ... NM_001277406.2 32.9% 31.9% (many diffs)
39 human 653269 POTEI POTE ankyrin domain family ... XM_024453046.1 32.9% 31.9% (many diffs)
40 human 445582 POTEE POTE ankyrin domain family ... NM_001083538.2 32.7% 31.8% (many diffs)
41 human 445582 POTEE POTE ankyrin domain family ... XM_017004161.2 32.7% 31.8% (many diffs)
42 human 728378 POTEF POTE ankyrin domain family ... NM_001099771.2 32.7% 31.6% (many diffs)
43 human 653269 POTEI POTE ankyrin domain family ... XM_011511670.2 32.6% 31.6% (many diffs)
44 human 653269 POTEI POTE ankyrin domain family ... XM_017004732.2 32.6% 31.6% (many diffs)
45 human 728378 POTEF POTE ankyrin domain family ... XM_017004833.1 32.4% 31.3% (many diffs)
46 human 653269 POTEI POTE ankyrin domain family ... NM_001371926.1 32.3% 31.2% (many diffs)
47 human 440915 POTEKP POTE ankyrin domain family ... NR_033885.3 32% (many diffs)
48 human 653781 POTEJ POTE ankyrin domain family ... NM_001277083.2 29.9% 29.3% (many diffs)
49 human 653781 POTEJ POTE ankyrin domain family ... XM_011511683.2 29.7% 29% (many diffs)
50 human 653781 POTEJ POTE ankyrin domain family ... XM_017004741.2 29.7% 29% (many diffs)
51 human 388468 POTEC POTE ankyrin domain family ... NR_134878.1 17.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1212
ORF length:
1143
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggtggctgag gtttgttcaa tgcccgctgc ctctgctgtg aagaagccat
121tcgatctcag gagcaagatg ggcaagtggt ttcaccaccg cttcccctgc tgcaagggga
181gcggcaagag caacatgggc acttctggag accacgacga ctcctttatg aagatgctca
241ggagcaagat gggcaagtgt tgccaccact gcttcccctg ctgcaggggg agcggcacga
301gcaacgtggg cacttctgga gacgatgaca actcctttat gaagacgctc aggagcaaga
361tgggcaagtg gtgctgtcac tgcttcccct gctgcagggg gagcggcaag agcaacgtgg
421gcgcttgggg agactacgac gacagcgcct tcatggagcc gaggtaccac gtccgtcgag
481aagatctgga caagctccac agagctgcct ggtggggtaa ggtccccaga aaggatctca
541tcgtcatgct cagggacacg gacatgaaca agagggacaa gcaaaagagg actgctctac
601atttggcctc tgccaatgga aattcagaag tagtacaact cctgctggac agacgatgtc
661aacttaatgt ccttgacaac aaaaaaagga cagctctgat aaaggccgta caatgccagg
721aagatgaatg tgtgttaatg ttgctggaac atggcgctga tcaaaatatt ccagatgagt
781atggaaatac cactctacac tatgctgtcc acaatgaaga taaattaatg gccaaagcac
841tgctcttata tggtgctgat attgaatcaa aaaacaagtg tggcctcaca ccacttttgc
901ttggcgtaca tgaacaaaaa cagcaagtgg tgaaattttt aatcaagaaa aaagctaatt
961taaatgcact tgatagatat ggaagaactg ccctcatact tgctgtatgt tgtggatcag
1021caagtatagt caatcttctC CTTGAGCAAA ATGTTGATGT ATCTTCTCAA GATCTATGTG
1081GACAGACGGC CAGAGAGTAT GCTGTTTCTA GTCATCATCA TGTAATTTGT GAATTACTTT
1141CTGACTATAA AGAAAAACAG ATGCTAAAAA TCTCTTCTGA AAACAGCAAT CCAGGTAAAG
1201AAGCAGAAGA ATTGCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1261ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
1321CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGACTA CCGATTGCAT GCTTACATGG
1381AACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)