Construct: ORF TRCN0000475787
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018100.1_s317c1
- Derived from:
- ccsbBroadEn_10647
- DNA Barcode:
- AGGGTTGCTCTCTGCCTCCACAGC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RNF216P1 (441191)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475787
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54476 | RNF216 | ring finger protein 216 | XM_011515436.2 | 10.1% | 7.7% | (many diffs) |
| 2 | human | 54476 | RNF216 | ring finger protein 216 | XM_024446806.1 | 10.1% | 7.7% | (many diffs) |
| 3 | human | 54476 | RNF216 | ring finger protein 216 | XM_024446807.1 | 10.1% | 7.7% | (many diffs) |
| 4 | human | 441191 | RNF216P1 | ring finger protein 216 pse... | NR_023384.1 | 9.2% | 1_498del;724_2443del | |
| 5 | human | 54476 | RNF216 | ring finger protein 216 | XM_017012364.2 | 6.9% | 5.2% | (many diffs) |
| 6 | human | 441191 | RNF216P1 | ring finger protein 216 pse... | NR_015449.1 | 6.8% | 1_498del;580_581ins65;659_2270del | |
| 7 | human | 54476 | RNF216 | ring finger protein 216 | NM_207116.3 | 5.8% | 4.3% | (many diffs) |
| 8 | human | 54476 | RNF216 | ring finger protein 216 | XM_017012363.2 | 5.8% | 4.3% | (many diffs) |
| 9 | human | 54476 | RNF216 | ring finger protein 216 | NM_207111.4 | 5.4% | 4% | (many diffs) |
| 10 | human | 54476 | RNF216 | ring finger protein 216 | XM_005249785.2 | 5.4% | 4% | (many diffs) |
| 11 | human | 54476 | RNF216 | ring finger protein 216 | XM_024446805.1 | 5.4% | 4% | (many diffs) |
| 12 | mouse | 108086 | Rnf216 | ring finger protein 216 | XM_011240968.2 | 7.1% | 5.6% | (many diffs) |
| 13 | mouse | 108086 | Rnf216 | ring finger protein 216 | XM_006504648.3 | 6.9% | 5.5% | (many diffs) |
| 14 | mouse | 108086 | Rnf216 | ring finger protein 216 | XM_017320592.1 | 6.9% | 5.5% | (many diffs) |
| 15 | mouse | 108086 | Rnf216 | ring finger protein 216 | XM_017320593.1 | 6.9% | 5.5% | (many diffs) |
| 16 | mouse | 108086 | Rnf216 | ring finger protein 216 | NM_080561.4 | 5.4% | 4.3% | (many diffs) |
| 17 | mouse | 108086 | Rnf216 | ring finger protein 216 | XM_006504645.3 | 5.4% | 4.3% | (many diffs) |
| 18 | mouse | 108086 | Rnf216 | ring finger protein 216 | NM_207110.1 | 5.1% | 4% | (many diffs) |
| 19 | mouse | 108086 | Rnf216 | ring finger protein 216 | XM_006504644.3 | 5.1% | 4% | (many diffs) |
| 20 | mouse | 108086 | Rnf216 | ring finger protein 216 | XM_017320591.1 | 5.1% | 4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 318
- ORF length:
- 225
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA CCATGGCCGA CTTCAAAGTG CTCAGTAGTC 121 AGGACATCAT GTGGGCCCTG CACGAGCTCA AAGGACACTA TGCAATCACC CGAAAGGACT 181 TTGAGAGTCA TCAGCATATG GAAAATCTCA CCAGCCAGGA TGAGGTACCC AGAGATACCA 241 GGCCTTTTCT GATGCCATTA AAAAATGGCA GGAGCTATCA CCAGAAACCA GTGGAAAAAG 301 GAAAAAGAGA AAAGAAATTG CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 361 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 421 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAAGGGTTG CTCTCTGCCT 481 CCACAGCACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt